Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C15
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.94 
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    28   1.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   2.2  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   5.0  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   8.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   8.8  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 145 LLPVQETASDYLKRKRSCSPKPSTSTQKHVSTTQATATAPDNLKKKKK 2
           L  + E  S     K+SC   P+TS ++ V+ ++ T    D+LK+ +K
Sbjct: 19  LAKLNELESILKDAKKSCLKDPTTSMKELVACSEKTQQVFDDLKRTEK 66


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 133 QETASDYLKRKRSCSPKPSTSTQKHVSTTQATATAPDNLKKKKK 2
           Q +++   + +R   P P T+    V T QA   AP   K +KK
Sbjct: 382 QTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAPSKEKSRKK 425


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 206 DGDGRVRSVYAYNNCVLVLCM----QKSLSNXAVXKDW 307
           +G+  V+S+ A+N+CV  LC       S SN  V K W
Sbjct: 164 NGEKLVKSILAHNDCVRSLCQIPGGFASCSNDGVIKLW 201


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 85  KPSTSTQKHVSTTQATATAPDNLKKKK 5
           + STS+ KH   T+ T T   N K++K
Sbjct: 428 RKSTSSSKHKLNTENTVTKTSNKKRRK 454


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 145 LLPVQETASDYLKRKRSCSPKPSTSTQKHVSTTQATATAPDNL 17
           LLP +E  S+  KR+R           + VSTT    +  DNL
Sbjct: 220 LLPKEEKLSEQAKRERDDLKNIMQLEDESVSTTSVHDSEDDNL 262


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 134 PGNCIRLFKKEKIVQPQTFNIDSKTCINYPG 42
           PGN     K++   +PQTFN DS    N PG
Sbjct: 670 PGNKCTPNKRDSHREPQTFNCDS---FNEPG 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,123
Number of Sequences: 5004
Number of extensions: 43662
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)