Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C15
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0214 + 15487367-15487388,15488220-15488375,15488690-154889...    30   2.3  
04_03_0621 - 18102243-18104249                                         29   3.0  
07_03_0632 - 20112297-20116562                                         28   6.9  
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675...    28   6.9  
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    28   9.2  

>03_03_0214 +
           15487367-15487388,15488220-15488375,15488690-15488925,
           15489013-15489132,15490466-15490480
          Length = 182

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 226 TNPAVSISHYGKKRSCSLKPSTSIQNYLLPVQETASDYLKRKRSCSPKPSTSTQKHVSTT 47
           T+P +++      R    +P+ S+ N  L  +E  +  LKR RS + K  T  +K  STT
Sbjct: 76  TSPCINLGDPCAARVDVQEPNVSLTNASLKKKEFRTRNLKRNRSWTDKNGTRRKKQ-STT 134

Query: 46  QAT 38
           + T
Sbjct: 135 KKT 137


>04_03_0621 - 18102243-18104249
          Length = 668

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 136 VQETASDYLKRKRSCSPKPSTSTQKHVSTTQATATA 29
           + ETAS +L +KR        ST++H S T + A++
Sbjct: 466 IYETASQHLSKKRGFHEAAHESTKRHCSPTTSAASS 501


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = -2

Query: 278  DFFACIVQA-HNYCKHIQNEPCRLHQSLWEEKV--LQPKTFNIDSKLPITCPGNCIRLFK 108
            D F C + A    C H + +   LHQ  W E++  LQ   F+    L    P N + L  
Sbjct: 1215 DNFLCKLSALRTLCLH-KIDVISLHQEKWLEQITSLQELEFSCCYLLR-QLPSNLVTLSS 1272

Query: 107  KEKIVQPQTFNIDSKTCINYPGN 39
             +K+     F I S      PGN
Sbjct: 1273 LKKLNMQSCFQIHSLPLKGLPGN 1295


>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
            6759967-6760077,6760562-6760663,6761139-6761366,
            6761568-6761696,6761753-6761869,6761955-6762301,
            6762377-6762931,6763104-6763182,6763429-6763595,
            6763857-6764075,6764956-6765139,6765175-6765371,
            6765717-6766035,6766379-6766538,6767642-6767794,
            6767911-6768013
          Length = 1226

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 178  SLKPSTSIQNYLLPVQE--TASDYLKRKRSCSPKPSTSTQKHVSTTQATATAPDN 20
            ++K  T +    L  QE  T +D +  + +C PKP T+ ++      + A+  DN
Sbjct: 948  AMKRRTKVPEAPLSAQELATQTDQMLGEHNCDPKPETTRRRRKRQNVSHASYEDN 1002


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/50 (22%), Positives = 29/50 (58%)
 Frame = -3

Query: 187 RSCSLKPSTSIQNYLLPVQETASDYLKRKRSCSPKPSTSTQKHVSTTQAT 38
           +S S  PS+ +       +++A  + ++K+S +PK  +S++K +   +++
Sbjct: 515 KSSSKTPSSKVSKEKESPEDSAKVFSRKKKSVTPKRPSSSEKEIKDKKSS 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,196
Number of Sequences: 37544
Number of extensions: 278695
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)