Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_C15
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX640603-1|CAE45709.1| 234|Homo sapiens hypothetical protein pr... 31 4.5
BT006795-1|AAP35441.1| 228|Homo sapiens zinc finger protein 313... 31 4.5
BC066919-1|AAH66919.1| 228|Homo sapiens zinc finger protein 313... 31 4.5
BC013695-1|AAH13695.1| 228|Homo sapiens zinc finger protein 313... 31 4.5
AL031685-2|CAB46028.1| 228|Homo sapiens zinc finger protein 313... 31 4.5
AF265215-1|AAF75763.1| 228|Homo sapiens zinc finger protein 313... 31 4.5
D87012-1|BAA20009.1| 753|Homo sapiens topoisomerase-III protein. 30 7.8
CR456596-1|CAG30482.1| 862|Homo sapiens TOP3B protein. 30 7.8
BC104477-1|AAI04478.1| 98|Homo sapiens TDG protein protein. 30 7.8
BC002432-1|AAH02432.1| 862|Homo sapiens topoisomerase (DNA) III... 30 7.8
AF125216-1|AAD29670.1| 862|Homo sapiens DNA topoisomerase III b... 30 7.8
AF053082-1|AAD15791.1| 862|Homo sapiens DNA topoisomerase III b... 30 7.8
AF017146-1|AAD01614.1| 862|Homo sapiens DNA topoisomerase III b... 30 7.8
>BX640603-1|CAE45709.1| 234|Homo sapiens hypothetical protein
protein.
Length = 234
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 320 QXDATNPSIXXCSKDFFACIVQAH-NYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLP 144
Q ++T S C K+FF +++H C QN ++ ++ LQP+ N+ ++
Sbjct: 89 QIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPR--NVPNRYT 146
Query: 143 ITCPGNCIRLFKKEKIVQ 90
CP + F +E +V+
Sbjct: 147 FPCPYCPEKNFDQEGLVE 164
>BT006795-1|AAP35441.1| 228|Homo sapiens zinc finger protein 313
protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 320 QXDATNPSIXXCSKDFFACIVQAH-NYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLP 144
Q ++T S C K+FF +++H C QN ++ ++ LQP+ N+ ++
Sbjct: 83 QIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPR--NVPNRYT 140
Query: 143 ITCPGNCIRLFKKEKIVQ 90
CP + F +E +V+
Sbjct: 141 FPCPYCPEKNFDQEGLVE 158
>BC066919-1|AAH66919.1| 228|Homo sapiens zinc finger protein 313
protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 320 QXDATNPSIXXCSKDFFACIVQAH-NYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLP 144
Q ++T S C K+FF +++H C QN ++ ++ LQP+ N+ ++
Sbjct: 83 QIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPR--NVPNRYT 140
Query: 143 ITCPGNCIRLFKKEKIVQ 90
CP + F +E +V+
Sbjct: 141 FPCPYCPEKNFDQEGLVE 158
>BC013695-1|AAH13695.1| 228|Homo sapiens zinc finger protein 313
protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 320 QXDATNPSIXXCSKDFFACIVQAH-NYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLP 144
Q ++T S C K+FF +++H C QN ++ ++ LQP+ N+ ++
Sbjct: 83 QIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPR--NVPNRYT 140
Query: 143 ITCPGNCIRLFKKEKIVQ 90
CP + F +E +V+
Sbjct: 141 FPCPYCPEKNFDQEGLVE 158
>AL031685-2|CAB46028.1| 228|Homo sapiens zinc finger protein 313
protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 320 QXDATNPSIXXCSKDFFACIVQAH-NYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLP 144
Q ++T S C K+FF +++H C QN ++ ++ LQP+ N+ ++
Sbjct: 83 QIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPR--NVPNRYT 140
Query: 143 ITCPGNCIRLFKKEKIVQ 90
CP + F +E +V+
Sbjct: 141 FPCPYCPEKNFDQEGLVE 158
>AF265215-1|AAF75763.1| 228|Homo sapiens zinc finger protein 313
short isoform protein.
Length = 228
Score = 31.1 bits (67), Expect = 4.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -2
Query: 320 QXDATNPSIXXCSKDFFACIVQAH-NYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLP 144
Q ++T S C K+FF +++H C QN ++ ++ LQP+ N+ ++
Sbjct: 83 QIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPR--NVPNRYT 140
Query: 143 ITCPGNCIRLFKKEKIVQ 90
CP + F +E +V+
Sbjct: 141 FPCPYCPEKNFDQEGLVE 158
>D87012-1|BAA20009.1| 753|Homo sapiens topoisomerase-III protein.
Length = 753
Score = 30.3 bits (65), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 257 QAHNYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLPITCP 132
+ H + K+IQ +P RLH S +E P+ I + CP
Sbjct: 631 KCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCP 672
>CR456596-1|CAG30482.1| 862|Homo sapiens TOP3B protein.
Length = 862
Score = 30.3 bits (65), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 257 QAHNYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLPITCP 132
+ H + K+IQ +P RLH S +E P+ I + CP
Sbjct: 626 KCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCP 667
>BC104477-1|AAI04478.1| 98|Homo sapiens TDG protein protein.
Length = 98
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 139 PVQETASDYLKRKRSCSPKPSTSTQKHVSTTQATATAPDNLKKKKK 2
PVQE ++ R+ PK +K V + ++ +A KKKKK
Sbjct: 53 PVQEAPKGRKRKPRTTEPKQPVEPKKPVESKKSGKSAKKKKKKKKK 98
>BC002432-1|AAH02432.1| 862|Homo sapiens topoisomerase (DNA) III
beta protein.
Length = 862
Score = 30.3 bits (65), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 257 QAHNYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLPITCP 132
+ H + K+IQ +P RLH S +E P+ I + CP
Sbjct: 626 KCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCP 667
>AF125216-1|AAD29670.1| 862|Homo sapiens DNA topoisomerase III beta
protein.
Length = 862
Score = 30.3 bits (65), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 257 QAHNYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLPITCP 132
+ H + K+IQ +P RLH S +E P+ I + CP
Sbjct: 626 KCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCP 667
>AF053082-1|AAD15791.1| 862|Homo sapiens DNA topoisomerase III beta
protein.
Length = 862
Score = 30.3 bits (65), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 257 QAHNYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLPITCP 132
+ H + K+IQ +P RLH S +E P+ I + CP
Sbjct: 626 KCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCP 667
>AF017146-1|AAD01614.1| 862|Homo sapiens DNA topoisomerase III beta
protein.
Length = 862
Score = 30.3 bits (65), Expect = 7.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 257 QAHNYCKHIQNEPCRLHQSLWEEKVLQPKTFNIDSKLPITCP 132
+ H + K+IQ +P RLH S +E P+ I + CP
Sbjct: 626 KCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCP 667
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,546,814
Number of Sequences: 237096
Number of extensions: 1579122
Number of successful extensions: 2916
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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