Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_C13
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 31 1.3
05_07_0157 - 28079181-28079720 30 1.7
01_04_0060 - 15552024-15552070,15552249-15552435,15552643-155529... 30 2.2
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 29 3.9
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 29 5.2
07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637 28 6.8
05_03_0416 + 13684604-13688050 28 6.8
03_03_0028 + 13893813-13893959,13894961-13895264,13896557-138967... 28 6.8
10_01_0162 + 1820761-1821855 28 9.0
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 28 9.0
06_03_0804 + 24761974-24763196,24763674-24764019 28 9.0
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 268 ASRGRS-AYLLRFLSACGVAQRRVLRAVXSGAVASLFVLP 384
A +G++ AYLL+ LS+CG L SG A LF +P
Sbjct: 319 AGKGQALAYLLKKLSSCGKPPNNTLACGDSGNDAELFSIP 358
>05_07_0157 - 28079181-28079720
Length = 179
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +3
Query: 111 RGAVHGGRDRQTVHAAEFACDPIVVEQGPVGGHADGASPWRELPQEVVPELDGVAR 278
RG V ++R V AA FA +V G GG DGA + V+ E+ AR
Sbjct: 69 RGLVDHLQERLGVSAAAFAPAAVVAAPGAAGGGEDGAPAEKTEFDVVIEEVPSSAR 124
>01_04_0060 -
15552024-15552070,15552249-15552435,15552643-15552930,
15553027-15553221,15553330-15553431,15553588-15553842,
15553936-15553995
Length = 377
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 268 ASRGRS-AYLLRFLSACGVAQRRVLRAVXSGAVASLFVLP 384
A +G++ AYLL+ LS+CG L SG A LF +P
Sbjct: 159 AGKGQALAYLLKKLSSCGKPPNNTLVCGDSGNDAELFSIP 198
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 585 QXAAFNXCLYRXMSSAGWLLVIDVDE-VVLPH 493
Q N CL+R +A W DVDE + LP+
Sbjct: 334 QFLVVNDCLHRYRHAANWTFFFDVDEYIYLPN 365
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 585 QXAAFNXCLYRXMSSAGWLLVIDVDEVV 502
Q N CL+R +A W DVDE +
Sbjct: 337 QFLVVNDCLHRYRHAANWTFFFDVDEYI 364
>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
Length = 216
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 36 YVGQAMVKLFLSVFILXLELVGPPVRGAVHGGRDRQTVHAAE 161
Y +A+V+ +V L VG P+ HGG TVHA +
Sbjct: 54 YASEALVRRATAVARPRLAGVGTPIGKFTHGGAFHLTVHALD 95
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 358 AVASLFVLPAQIEECIPEQKGGWCLRWWI 444
AV + P++IEE + GG CL WW+
Sbjct: 770 AVLNALEPPSRIEEILIYYYGGPCLPWWM 798
>03_03_0028 +
13893813-13893959,13894961-13895264,13896557-13896761,
13897428-13897646,13897734-13897869,13899130-13899387,
13899402-13899686
Length = 517
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 60 LFLSVFILXLELVGPPVRGAVHGGRDRQTVHAAEFAC--DPIVVEQGPVGGHADGASPWR 233
L++S + + P V VH G T A E+AC +++ G VG + + W+
Sbjct: 364 LYVSSISSGIPALAPAVLMGVHDGDGVATKEALEWACAIPDLLLASGEVGRLLNDIAAWK 423
Query: 234 E 236
E
Sbjct: 424 E 424
>10_01_0162 + 1820761-1821855
Length = 364
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 92 ARRSTGARCGPRWTGPSDSSCRRI 163
ARR GAR W+ +D CRR+
Sbjct: 144 ARRERGARLAALWSALADRLCRRV 167
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 226 GLAPSACPPTGPCSTTIGSHA 164
G +P+A PPTGP S+ S A
Sbjct: 52 GASPAAAPPTGPASSPAASPA 72
>06_03_0804 + 24761974-24763196,24763674-24764019
Length = 522
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 585 QXAAFNXCLYRXMSSAGWLLVIDVDEVV 502
Q N CL+R +A W DVDE +
Sbjct: 335 QFLVVNDCLHRYRHAARWTFFFDVDEYI 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,064
Number of Sequences: 37544
Number of extensions: 311826
Number of successful extensions: 980
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -