Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C11
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    67   3e-12
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    63   5e-11
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.54 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.1  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   6.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 29/49 (59%), Positives = 35/49 (71%)
 Frame = -2

Query: 501 LLFPCNTKFSHXIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
           +  P N K    IGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 161 IAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = -1

Query: 553 IPGIALGNTXSPLRFVDIVIPMQH---QVFPLYWF----DVV-VVGT*SAEASWCASP 404
           IP IAL +T S L  VDI IP  +   +   L W+    +V+ V GT S  A W   P
Sbjct: 144 IPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMP 201


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = -2

Query: 492 PCNTKFSHXIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
           P N K    IGL W+LLAREVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 165 PINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 553 IPGIALGNTXSPLRFVDIVIPMQHQ 479
           IP IAL +T S L  VD+ IP+ ++
Sbjct: 145 IPVIALCDTDSILNHVDVAIPINNK 169


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 350 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIK 460
           L  S+  N+S+T +++ SR    ST RS STS AN H  K
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRK 138


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 419 VVCFPVTSAGMLWLICSSTVTPEESEKD 336
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 403 TGKHTTKPQHFTCQQPPHQTNXVGKLGVAWE*Q 501
           TG +  K   F+ +Q  + T+ + KLGV W+ Q
Sbjct: 417 TGNYDFKAAGFSEEQLRNLTSDMAKLGVCWQVQ 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,608
Number of Sequences: 5004
Number of extensions: 39779
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)