Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C11
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    62   4e-10
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    62   4e-10
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.0  
06_03_0543 + 21967787-21970261                                         29   5.3  
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394...    29   5.3  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.0  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = -2

Query: 492 PCNTKFSHXIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
           P N K    IG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 35.5 bits (78), Expect = 0.046
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -1

Query: 607 LLDXGKNH*PIXEX*XFXIPGIALGNTXSPLRFVDIVIPMQHQ 479
           L D   +H PI E     IP IA  +T SP+R+VDI IP  ++
Sbjct: 128 LTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = -2

Query: 492 PCNTKFSHXIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 355
           P N K  + IG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211



 Score = 35.5 bits (78), Expect = 0.046
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -1

Query: 607 LLDXGKNH*PIXEX*XFXIPGIALGNTXSPLRFVDIVIPMQHQ 479
           L D   +H PI E     IP IA  +T SP+R+VDI IP  ++
Sbjct: 128 LTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>04_04_0835 +
           28538032-28539006,28539113-28539203,28539291-28539448,
           28539543-28539594,28539707-28539786,28539890-28539983,
           28540078-28540633,28541160-28541259,28541576-28541617,
           28542445-28542588
          Length = 763

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 515 KICGHCYSHATPSFPTXLV*CGGCWHVKC*GFVVCFPVTSAGM--LWLICSSTVTP 354
           K+  +C+   + S+   +V  G    ++C  FV+ F VTS  +  LW I  + + P
Sbjct: 642 KLLRNCFQGTSNSWGQVIVTAGWDGRIRCGQFVLLFGVTSCLLWTLWSISRAIIVP 697


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,123,623
Number of Sequences: 37544
Number of extensions: 272880
Number of successful extensions: 721
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)