Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C10
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    40   4e-04
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    28   1.2  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.7  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   4.9  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -1

Query: 531 PFWDIKGCYTAQFEHTILLRPT 466
           P  DI+G YTAQFEHTI+L PT
Sbjct: 394 PLCDIRGSYTAQFEHTIILHPT 415



 Score = 33.1 bits (72), Expect = 0.043
 Identities = 25/77 (32%), Positives = 29/77 (37%)
 Frame = -2

Query: 662 LXGINKNFGTLGFXKXWXERXGAFS*RDGXEGXXXXXXXGRXPAPFGTSRGVTPHSSNTP 483
           L  I +NFGTL F + + +R G                    P P    RG         
Sbjct: 351 LNTITQNFGTLPFCRRYLDRIGESKYLLALNNLVSAGIVQDYP-PLCDIRGSYTAQFEHT 409

Query: 482 SCSDPPAKEVVSRGDDY 432
               P  KEVVSRGDDY
Sbjct: 410 IILHPTQKEVVSRGDDY 426


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 361 TALTVVVKRLKDLQMFELF*YWKCSCNAFIT--CFGVV 254
           T L  +V +LKD ++ +L  YW    N FI   C+ ++
Sbjct: 536 TELNAIVSQLKDERILKLQTYWSIGINLFILIGCYVII 573


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 86  PYQLTYTKIFWGNN*KSSPTAGLL 157
           PY + YT +F+G++  +SP+  LL
Sbjct: 377 PYFIIYTLVFFGSSIANSPSVSLL 400


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 460 LAGGSEQDGVFELCGVTPLDVPKG 531
           L  GSE+DG  +  G+TPL + +G
Sbjct: 119 LPEGSEEDGHLKETGITPLSLQQG 142


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -3

Query: 532 PLLGHQGVLHRTVRTHHPAQTHLPRKSCPVAMTTNLRSD*P 410
           P+L    ++H  +         LPR   P+  TT LRS  P
Sbjct: 292 PVLDKNPLIHNVLTDRSIISCSLPRDRSPITKTTVLRSGVP 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,496
Number of Sequences: 5004
Number of extensions: 54066
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)