Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C07
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0011 + 17139322-17139451,17139552-17140174                       25   2.4  
02_05_0543 + 29872168-29872767,29873089-29873115                       24   6.9  
08_01_0111 + 850047-850218,850366-850649,851017-851763                 24   8.4  
12_02_0299 - 17051570-17052474,17053542-17053755                       28   9.7  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   9.7  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    28   9.7  

>05_04_0011 + 17139322-17139451,17139552-17140174
          Length = 250

 Score = 24.6 bits (51), Expect(2) = 2.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 748 PPPPXPPSXP 777
           PPPP PPS P
Sbjct: 104 PPPPPPPSPP 113



 Score = 23.8 bits (49), Expect(2) = 2.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 730 FFPXXXPPPPXPPS 771
           F P   PPPP PP+
Sbjct: 65  FQPPPPPPPPSPPN 78


>02_05_0543 + 29872168-29872767,29873089-29873115
          Length = 208

 Score = 24.2 bits (50), Expect(2) = 6.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 724 WXFFPXXXPPPPXPP 768
           W   P   PPPP PP
Sbjct: 175 WGESPAAPPPPPPPP 189



 Score = 22.6 bits (46), Expect(2) = 6.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 748 PPPPXPPSXP 777
           PPPP PP  P
Sbjct: 182 PPPPPPPPPP 191


>08_01_0111 + 850047-850218,850366-850649,851017-851763
          Length = 400

 Score = 24.2 bits (50), Expect(2) = 8.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 724 WXFFPXXXPPPPXPP 768
           W F     PPPP PP
Sbjct: 372 WSFARSAAPPPPPPP 386



 Score = 22.2 bits (45), Expect(2) = 8.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 748 PPPPXPPS 771
           PPPP PPS
Sbjct: 381 PPPPPPPS 388


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +2

Query: 653 PGWAXSXXPXPXPPPXXPXSXXXXGXFFPXXXXPPLXPRXPP 778
           P +  S  P P PPP  P S       FP    PPL P  PP
Sbjct: 314 PSFYPSPPPPPPPPPPPPPS-------FP-WPFPPLAPLFPP 347



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 730 FFPXXXPPPPXPPSXP 777
           F+P   PPPP PP  P
Sbjct: 316 FYPSPPPPPPPPPPPP 331


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +2

Query: 668 SXXPXPXPPPXXPXSXXXXGXFFPXXXXPPLXPRXPP 778
           S  P P PPP  P +    G   P    PP  P  PP
Sbjct: 686 SKGPPPPPPPPLPPANRTNGPGVPSAPPPP--PPPPP 720


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +2

Query: 662 AXSXXPXPXPPPXXPXSXXXXG-XFFPXXXXPPLXPRXPP 778
           A S  P P PPP  P      G    P    PP  P  PP
Sbjct: 223 AASLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPPPGPPP 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,144,738
Number of Sequences: 37544
Number of extensions: 167078
Number of successful extensions: 2771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2312
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)