Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_C05
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 162 6e-41
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 149 3e-37
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 2.2
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 3.0
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 26 5.2
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 9.0
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 9.0
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 162 bits (393), Expect = 6e-41
Identities = 79/119 (66%), Positives = 93/119 (78%)
Frame = -2
Query: 711 KCFTSKMKGIXTGTLQKWPPGETRHSVVEDSQKAYXDAFEISKAKMQPTHPIRLGLALNF 532
K F KMKG L ++ GE R + S + Y A EI+ A++ PTHPIRLGLALNF
Sbjct: 120 KVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNF 179
Query: 531 SVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 355
SVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 180 SVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1
Query: 748 QHLIPKVSNPESKVFYLQNEGDXYRYLAEVA 656
+HLIP ++ ESKVFY + +GD YRYLAE A
Sbjct: 108 KHLIPNAASAESKVFYYKMKGDYYRYLAEFA 138
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 149 bits (362), Expect = 3e-37
Identities = 73/119 (61%), Positives = 90/119 (75%)
Frame = -2
Query: 711 KCFTSKMKGIXTGTLQKWPPGETRHSVVEDSQKAYXDAFEISKAKMQPTHPIRLGLALNF 532
K F KMKG L ++ GE + S +AY A +I+ A++ PT P+RLGLALNF
Sbjct: 119 KVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNF 178
Query: 531 SVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 355
SVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 179 SVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -1
Query: 748 QHLIPKVSNPESKVFYLQNEGDXYRYLAE 662
+HLIP + ESKVFY + +GD YRYLAE
Sbjct: 107 KHLIPAATTGESKVFYYKMKGDYYRYLAE 135
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 202 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 330
L + SV+I +TFS V+R L +T + VCW C L+ A+
Sbjct: 43 LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -1
Query: 763 FGLTCQHLIPKVSNPESKVFYLQNEGDXYRYLAEVATRR 647
FG L+ + + P +KV +LQ +G+ + + + TR+
Sbjct: 592 FGFLLAQLLNENNEPTTKVVHLQPDGNSFDLMRNLITRK 630
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 173 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 81
FA LPVP K C F F+ L +W+ D+
Sbjct: 31 FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 618 QKAYXDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 445
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 444 DTLNEDSYKDSTLIMQLLRDN 382
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 648 ETRHSVVEDSQKAYXDAFEISKAKMQPTHP-IRLGLALNFS 529
E R ED+++A ++ + A +QP H I L LA+N S
Sbjct: 1059 ERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 111 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 236
++T D +F + G++R RL+TF GFG PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,389
Number of Sequences: 5004
Number of extensions: 55238
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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