Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B22
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 723  PPPPPPP 743
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 723  PPPPPPP 743
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
 Frame = +1

Query: 133 GXSPNPLKGXPP--QKGAP 183
           G  PNP +G PP    GAP
Sbjct: 37  GSPPNPSQGPPPGGPPGAP 55


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 45   GPLEGISXSGRETCSSNQCWPF 110
            G ++G +   RET SSN  + F
Sbjct: 1037 GDIQGFNVGYRETSSSNPSYNF 1058


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 45   GPLEGISXSGRETCSSNQCWPF 110
            G ++G +   RET SSN  + F
Sbjct: 1033 GDIQGFNVGYRETSSSNPSYNF 1054


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 54   EGISXSGRETCSSNQCW 104
            +GI+ SG ++ SSN  W
Sbjct: 1064 DGITSSGSDSGSSNGSW 1080


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,479
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)