Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B21
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0219 + 1863478-1864041,1864459-1865109                           30   1.7  
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425...    29   5.3  
09_02_0073 - 3901841-3902023,3902328-3902528                           28   7.0  
06_01_0083 - 659510-661267,661577-662384,662700-663646                 28   9.3  
04_04_0588 - 26412487-26413887                                         28   9.3  

>01_01_0219 + 1863478-1864041,1864459-1865109
          Length = 404

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 159 LLLTSSYPILPQSKGSILQPRPRMEVPCSW 70
           LL    + ++P S   I+QP P  E PC W
Sbjct: 42  LLSPMLHSLVPSSSRPIMQPSPSPETPCVW 71


>05_01_0511 +
           4256220-4256828,4256920-4257175,4257247-4257309,
           4257397-4257491
          Length = 340

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 567 HCHAXLPPRXGPGSAPXWTXPSXPXPPESXHTGFS-FG 677
           H H   PP      AP  T PS   PP    TGF+ FG
Sbjct: 278 HVHRPTPPPHRGFRAPFTTPPSTSTPPVVPPTGFAQFG 315


>09_02_0073 - 3901841-3902023,3902328-3902528
          Length = 127

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 91  PRSWLQYGSLRLWKDRVGAGQK 156
           P SWL  G +R+++D  G G K
Sbjct: 98  PSSWLLDGEVRIYEDNAGGGDK 119


>06_01_0083 - 659510-661267,661577-662384,662700-663646
          Length = 1170

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 715 EAXXXXGXGFRXXPKENPVCXDSGGXGXDGXVQXGAEPGPXRGGSXAWQ 569
           E     G G    PKEN V  D+GG G  G    G +  P    S  W+
Sbjct: 253 ETKGTYGYGNAIWPKENEV--DNGGGGGGGGGLGGGDGQPAEFTSKPWR 299


>04_04_0588 - 26412487-26413887
          Length = 466

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = +3

Query: 582 LPPRXGPGSAPXWTXPS---XPXPPESXHTG 665
           L PR GPG  P W        P PP+  + G
Sbjct: 187 LSPRGGPGGVPPWLYQQLLRVPPPPQKLYRG 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,378,744
Number of Sequences: 37544
Number of extensions: 151807
Number of successful extensions: 547
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)