Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B20
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0763 + 6402901-6403971,6404581-6404826                           28   6.5  
08_02_1597 + 28128956-28129095,28129115-28129562                       28   6.5  
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    28   6.5  
01_06_0507 - 29893563-29894470,29895227-29895419                       28   6.5  
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622     28   8.6  
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656...    28   8.6  

>11_01_0763 + 6402901-6403971,6404581-6404826
          Length = 438

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 RGAPNIGSPCWRRDLVVWRXPSAGLRYRRG 267
           RGA + G P WR   V WR P+   R RRG
Sbjct: 243 RGAADGGRPDWRERRVRWRRPA--WRERRG 270


>08_02_1597 + 28128956-28129095,28129115-28129562
          Length = 195

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 RGAPNIGSPCWRRDLVVWRXPSAGLRYRRG 267
           RGA + G P WR   V WR P+   R RRG
Sbjct: 121 RGAADGGRPDWRERRVRWRRPA--WRERRG 148


>02_02_0279 -
           8507603-8507620,8508040-8508060,8508613-8508835,
           8509204-8509553,8509631-8509729,8509811-8510105,
           8510200-8510405,8510498-8510689,8510766-8511163,
           8511258-8511444,8511473-8511528,8511800-8511872,
           8512012-8512872,8514353-8514778
          Length = 1134

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 RGAPNIGSPCWRRDLVVWRXPSAGLRYRRG 267
           RGA + G P WR   V WR P+   R RRG
Sbjct: 101 RGAADGGRPDWRERRVRWRRPA--WRERRG 128


>01_06_0507 - 29893563-29894470,29895227-29895419
          Length = 366

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 178 RGAPNIGSPCWRRDLVVWRXPSAGLRYRR 264
           RGA + G P WR   V WR P    R RR
Sbjct: 305 RGAADGGRPDWRERRVRWRRPVRRGRQRR 333


>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
          Length = 313

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 178 RGAPNIGSPCWRRDLVVWRXPSAGLRYRRG 267
           RGA + G P WR   V WR P+   R RRG
Sbjct: 232 RGATDGGRPDWRERPVRWRRPA--WRERRG 259


>01_01_0841 -
           6564029-6564348,6564654-6564686,6564793-6565450,
           6565530-6565694,6565789-6565878,6565982-6566182,
           6566525-6566737,6566835-6567077
          Length = 640

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 259 RRGDLPGSRRIGWAANA 309
           R G LPGS+RI W AN+
Sbjct: 56  RSGVLPGSQRIAWRANS 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,010
Number of Sequences: 37544
Number of extensions: 266724
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)