Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B20
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 388 FXPPXXXXFXGFPPSFLXXXXPPXWGXPPXKXFXXPP 498
           F PP    F   PP F+    PP +  PP      PP
Sbjct: 296 FPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPP 332


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 388 FXPPXXXXFXGFPPSFLXXXXPPXWGXPPXKXFXXPP 498
           F PP    F   PP F+    PP +  PP      PP
Sbjct: 296 FPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPP 332


>AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical
           protein Y50D7A.11 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 149 RLVRTLCCGRSXPETSTCVPELQCVTDKW 63
           +L + + C R+ PE   CV E++ + D W
Sbjct: 66  KLDKLVYCSRTIPEIEKCVEEMKVLYDYW 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,994
Number of Sequences: 27780
Number of extensions: 193586
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)