Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_B18
(1018 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.049
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.049
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.049
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Frame = +2
Query: 794 PXPPXXXPXXPP--PXXXXXXXXXXXXXXPXXPPXXXXXPP-PXXXXXXXXXPPXXPXXP 964
P PP P PP P P PP PP P PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 965 XXPXPPPS 988
P P P+
Sbjct: 478 PAPAPAPA 485
Score = 33.1 bits (72), Expect = 0.064
Identities = 20/73 (27%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Frame = +1
Query: 799 PPXXXPPXXPPXXPXXXXXXXXXXXPXXXPXXXPXPP--PXAXXXXXXXPXXXPXXXPPP 972
PP PP PP P P P P PP P A P P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Query: 973 XXXPLXXXPPXNP 1011
P P P
Sbjct: 475 APPPAPAPAPAAP 487
Score = 31.1 bits (67), Expect = 0.26
Identities = 19/72 (26%), Positives = 19/72 (26%)
Frame = +1
Query: 784 PXXPXPPXXXPPXXPPXXPXXXXXXXXXXXPXXXPXXXPXPPPXAXXXXXXXPXXXPXXX 963
P P P PP PP P P P P PP P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP--LPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 964 PPPXXXPLXXXP 999
PPP P P
Sbjct: 476 PPPAPAPAPAAP 487
Score = 29.9 bits (64), Expect = 0.60
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +2
Query: 875 PXXPPXXXXXPPPXXXXXXXXXPPXXPXXPXXPXPPPSXXXXPXTPP 1015
P PP PP PP P P P P P PP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = +3
Query: 825 PPPXPXXXXXXXXXXXXXXXPXXXXXXPPPXXPPPXXXPXXXTPXXPXXRXXPPPXXTXX 1004
PPP P PPP PPP P P R PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 1005 KP 1010
P
Sbjct: 369 AP 370
Score = 26.2 bits (55), Expect = 7.4
Identities = 20/77 (25%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Frame = +2
Query: 794 PXPPXXXPXX---PPPXXXXXXXXXXXXXXPXXPPXXXXXPPPXXXXXXXXXPPXXPXXP 964
P PP P PPP P P PP PP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 965 XXPXPPPSXXXXPXTPP 1015
P PPS P PP
Sbjct: 423 LPPSAPPS--LPPSAPP 437
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.049
Identities = 24/103 (23%), Positives = 24/103 (23%)
Frame = +3
Query: 681 PXXXXPXXPXPPXXXXXXXPPXXXXXXXXXPXXXPXXXPXPXXPPPXXPPPXPXXXXXXX 860
P P PP PP P P P P PP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 861 XXXXXXXXPXXXXXXPPPXXPPPXXXPXXXTPXXPXXRXXPPP 989
P PPP PP P P P PP
Sbjct: 1200 VPKPSVGVP----PVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 31.5 bits (68), Expect = 0.20
Identities = 23/106 (21%), Positives = 25/106 (23%)
Frame = +1
Query: 697 PXXPXPXXXXXXXXPXXXXXXXXXPXXXXPXXPXPPXXXPPXXPPXXPXXXXXXXXXXXP 876
P P P P P P P P PP PP P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 877 XXXPXXXPXPPPXAXXXXXXXPXXXPXXXPPPXXXPLXXXPPXNPP 1014
P P P + P P PP P P + P
Sbjct: 1210 VPPPSTAPPVPTPS---AGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 29.9 bits (64), Expect = 0.60
Identities = 26/112 (23%), Positives = 27/112 (24%), Gaps = 1/112 (0%)
Frame = +3
Query: 681 PXXXXPXXPXPPXXXXXXXPPXXXXXXXXXPXXXPXXXPXPXXPPPXXPPPXPXXXXXXX 860
P P PP PP P P P P P PP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAPSGAPP 1160
Query: 861 XXXXXXXXPXXXXXXPPPXXPPPXXXPXXXTPXXPXXRXXPP-PXXTXXKPP 1013
P P PP P P P PP P + PP
Sbjct: 1161 VPKPSVAAP---PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/71 (23%), Positives = 17/71 (23%)
Frame = +3
Query: 801 PXXPPPXXPPPXPXXXXXXXXXXXXXXXPXXXXXXPPPXXPPPXXXPXXXTPXXPXXRXX 980
P P PP P P P PPP P P P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 981 PPPXXTXXKPP 1013
PP PP
Sbjct: 1083 PPVPAPSGIPP 1093
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +3
Query: 906 PPPXXPP--PXXXPXXXTPXXPXXRXXPPPXXTXXKPP 1013
PP PP P P +P P R P P + PP
Sbjct: 986 PPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPP 1023
Score = 26.6 bits (56), Expect = 5.6
Identities = 20/82 (24%), Positives = 21/82 (25%), Gaps = 1/82 (1%)
Frame = +3
Query: 771 PXXXPXXXPXPXXPPPXXPPPXPXXXXXXXXXXXXXXXPXXXXXXPPPXXPPPXXXPXXX 950
P P P P PP P P P P PP P
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV----PVPSGAPPVPKPSVA 1148
Query: 951 TPXXPXXRXXPP-PXXTXXKPP 1013
P P PP P + PP
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPP 1170
Score = 26.2 bits (55), Expect = 7.4
Identities = 25/111 (22%), Positives = 26/111 (23%), Gaps = 10/111 (9%)
Frame = +3
Query: 711 PPXXXXXXXPPXXXXXXXXXPXXXPXXXPX---PXXPPPXXPPPXPXXXXXXXXXXXXXX 881
PP PP P P P P P PP P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
Query: 882 XPXXXXXX------PPPXXPPPXXXPXXXTPXXPXXRXXPP-PXXTXXKPP 1013
P P P PP P P P PP P + PP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/68 (26%), Positives = 18/68 (26%)
Frame = +1
Query: 769 PXXXXPXXPXPPXXXPPXXPPXXPXXXXXXXXXXXPXXXPXXXPXPPPXAXXXXXXXPXX 948
P P P P P PP P P P PP A P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPI-PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197
Query: 949 XPXXXPPP 972
P PPP
Sbjct: 198 PPKVPPPP 205
Score = 27.9 bits (59), Expect = 2.4
Identities = 19/80 (23%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Frame = +3
Query: 696 PXXPXPPXXXXXXXPPXXXXXXXXXPXXXPXXXPXPXXPPPXXPPPXPXXXXXXXXXXXX 875
P P PP PP P P P P P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 876 XXXPXXXXXXP--PPXXPPP 929
P P PP PPP
Sbjct: 185 PSAPSLPSAVPPMPPKVPPP 204
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +2
Query: 884 PPXXXXXPPPXXXXXXXXXPPXXPXXPXXPXPPPSXXXXP 1003
PP PPP PP P P P P P
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +3
Query: 771 PXXXPXXXPXPXXPPPXXPPPXP 839
P P P P PP PPP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 769 PXXXXPXXPXPPXXXPPXXPPXXP 840
P P P PP PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.6
Identities = 13/47 (27%), Positives = 13/47 (27%)
Frame = +2
Query: 875 PXXPPXXXXXPPPXXXXXXXXXPPXXPXXPXXPXPPPSXXXXPXTPP 1015
P PP P P P P P PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +2
Query: 875 PXXPPXXXXXPPPXXXXXXXXXPPXXPXXPXXPXPPPS 988
P PP PPP PP P P PS
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,558,836
Number of Sequences: 5004
Number of extensions: 18762
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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