Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B17
         (1221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     31   1.8  
08_02_1310 - 26037025-26038074                                         29   7.4  
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866...    29   9.8  

>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 756 PPPXPPPXXXGGGGXG 803
           PPP PPP   GGGG G
Sbjct: 12  PPPPPPPFGRGGGGAG 27


>08_02_1310 - 26037025-26038074
          Length = 349

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 756 PPPXPPPXXXGGGG 797
           PPP PPP   GGGG
Sbjct: 152 PPPPPPPSSGGGGG 165


>09_04_0745 +
           19884868-19886000,19886110-19886309,19886422-19886666,
           19886880-19887668
          Length = 788

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 650 PPPPPXXFFFFXXKXKKKKXPPP 582
           PPPPP  FF F       + PPP
Sbjct: 58  PPPPPAPFFPFLPDSAPPQLPPP 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,434
Number of Sequences: 37544
Number of extensions: 337957
Number of successful extensions: 5196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4385
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)