Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B16
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.96 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 699 PPXXPPXXXLPPPXXPPXXPPP 764
           PP  PP     PP  PP  PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.5 bits (63), Expect = 0.55
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 699 PPXXPPXXXLPPPXXPPXXPPP 764
           PP  PP    PP   PP  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP 26


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +3

Query: 618 PXAAPPSXXXXPPPXXXXXXXXXXXXXPPXXPPXXXLPPPXXPPXXPPP 764
           P  APP     PPP             PP  P      PP  P   PPP
Sbjct: 161 PSKAPPIPSSLPPP----AQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +3

Query: 624 AAPPSXXXXPPPXXXXXXXXXXXXXPPXXPPXXXLPPPXXPPXXPP 761
           AAPPS    P P             P   PP     PP  P   PP
Sbjct: 122 AAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPP-IPSKAPP 166


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +3

Query: 618 PXAAPPSXXXXPPPXXXXXXXXXXXXXPPXXPPXXXLPP-PXXPPXXPP 761
           P + PPS     PP             PP  P     PP P   P  PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/50 (30%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
 Frame = +3

Query: 618 PXAAPPSXXXXPPPXXXXXXXXXXXXXPPXXPPXXXLP--PPXXPPXXPP 761
           P A PP+      P             PP   P    P  PP  PP  PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 21/82 (25%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
 Frame = +1

Query: 412 PPPXRXXLXPXXPGPXXXXXTXGXXPPXXXQXXXTXPPXXPPXXWPLXXPXASXXXXPPX 591
           P P +    P  P P     T    PP       + PP  PP       P  S    PP 
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP-----AIPGRSAPALPPL 406

Query: 592 XXXXXXHXXP-RXPPXLXXXGP 654
                    P   PP L    P
Sbjct: 407 GNASRTSTPPVPTPPSLPPSAP 428


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
 Frame = +3

Query: 699  PPXXPPXXXLPP-PXXPPXXPPP 764
            P   PP    PP P  PP  PPP
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +3

Query: 624  AAPPSXXXXPPPXXXXXXXXXXXXXPPXXPPXXXLPPPXXPPXXP 758
            AAPP      PP             PP  PP    PP   PP  P
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPP-----PPSAPPMPAGPPSAPPPPLP 1736


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
 Frame = +3

Query: 618  PXAAPPSXXXX-PPPXXXXXXXXXXXXXPPXXPPXXXLPPPXXPPXXPPP 764
            P   PPS     P P             PP   P   LPP   P    PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/48 (27%), Positives = 13/48 (27%)
 Frame = +3

Query: 618  PXAAPPSXXXXPPPXXXXXXXXXXXXXPPXXPPXXXLPPPXXPPXXPP 761
            P  AP      P P             PP   P    PP   P   PP
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,985
Number of Sequences: 5004
Number of extensions: 21112
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)