Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B12
         (1311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.087
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.47 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   4.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -3

Query: 595 PPPPPXG--GXXXPPPPPP 545
           PPPPP G  G   PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 595 PPPPPXGGXXXPPPPPPXKKG 533
           PPP P  G   PPPPPP   G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 595 PPPPPXGGXXXPPPPPP 545
           P PPP      PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 595 PPPPPXGGXXXPPPPPPXKKGXXK 524
           PPPPP G      PPPP   G  K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 29.9 bits (64), Expect = 0.81
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -3

Query: 595 PPPPPXGGXXXP--PPPPP 545
           PPPPP  G   P  PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 562 PPPPPPXKKGXXK 524
           PPPPPP ++   K
Sbjct: 312 PPPPPPSRRNRGK 324



 Score = 22.2 bits (45), Expect(2) = 4.4
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -3

Query: 595 PPPPPXGGXXXPPPPPPXK 539
           P PPP  G    PP  P +
Sbjct: 255 PIPPPSNGTVSSPPNSPPR 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,278,474
Number of Sequences: 5004
Number of extensions: 13688
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)