Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_B11
(1087 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 33 0.52
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.6
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 31 2.1
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 2.8
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.9
07_01_0080 + 587674-588510 29 6.4
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 29 6.4
01_01_1125 - 8920590-8924372 29 6.4
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 8.5
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 32.7 bits (71), Expect = 0.52
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 518 KKKKKXXXXFXPPPPPXKKXXGGGXXPPPP 607
KKKK+ PPPPP G PPPP
Sbjct: 101 KKKKRHHHHHPPPPPPPHLLHYYGHPPPPP 130
Score = 32.3 bits (70), Expect = 0.69
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +2
Query: 509 LXKKKKKKXXXXFXPPPPPXKKXXGGGXXPPPP 607
L KKKK+ PPPPP G PPPP
Sbjct: 99 LFKKKKRHHHHHPPPPPPPHLLHYYGHPPPPPP 131
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.1 bits (67), Expect = 1.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPP 604
PPPPP GGG PPP
Sbjct: 370 PPPPPGAAGRGGGGPPPP 387
Score = 28.7 bits (61), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPP P G G PPPP
Sbjct: 334 PPPAPSPSAAGAGSGPPPP 352
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 30.7 bits (66), Expect = 2.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPPXL 613
PPPPP K G PPPP +
Sbjct: 599 PPPPPPKSTGPGPPRPPPPAM 619
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.3 bits (65), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPPPP GG PPPP
Sbjct: 929 PPPPPPPGKPGGPPPPPPP 947
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPPPP K G PPPP
Sbjct: 930 PPPPPPGKPGGPPPPPPPP 948
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPPPP GG PPPP
Sbjct: 364 PPPPPPPGGKKGGPPPPPP 382
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPPPP K PPPP
Sbjct: 313 PPPPPPPKPAAAAPPPPPP 331
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPPXL 613
PPPPP + G PPPP L
Sbjct: 764 PPPPPPQAPKPPGTVPPPPPL 784
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPPPP G PPPP
Sbjct: 91 PPPPPPPPPSSGSPPPPPP 109
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 552 PPPPXXKKXXGGGXXPPPP 608
PPPP ++ GGG PPP
Sbjct: 73 PPPPTSRRGGGGGAALPPP 91
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPPXL 613
PPPPP GG PPP L
Sbjct: 164 PPPPPSAMPLAGGEPRPPPPL 184
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 551 PPPPPXKKXXGGGXXPPPP 607
PPPPP K GG PPPP
Sbjct: 626 PPPPPGKP---GGPPPPPP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,562
Number of Sequences: 37544
Number of extensions: 264385
Number of successful extensions: 1558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3246260488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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