Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B09
         (971 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   7.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 714 GGPPPPPPP 740
           GGPPPPPPP
Sbjct: 759 GGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 715 GAPPPPPPP 741
           G PPPPPPP
Sbjct: 759 GGPPPPPPP 767



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 717 GPPPPPPP 740
           GPPPPPPP
Sbjct: 774 GPPPPPPP 781



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 715 GAPPPPPPP 741
           G PPPPPPP
Sbjct: 760 GPPPPPPPP 768



 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 721 PPPPPPP 741
           PPPPPPP
Sbjct: 777 PPPPPPP 783



 Score = 21.4 bits (43), Expect(2) = 3.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 718 APPPPPP 738
           +PPPPPP
Sbjct: 731 SPPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 714 GGPPPPPPP 740
           G PPPPPPP
Sbjct: 7   GNPPPPPPP 15


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 715 GAPPPPPPP 741
           G PPPPPPP
Sbjct: 304 GLPPPPPPP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,933
Number of Sequences: 5004
Number of extensions: 5592
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)