Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B09
         (971 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    25   1.0  
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    24   2.9  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    29   5.6  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    24   6.6  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   7.4  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    25   8.2  

>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 25.4 bits (53), Expect(2) = 1.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 APPPPPPP 741
           APPPPPPP
Sbjct: 3   APPPPPPP 10



 Score = 24.6 bits (51), Expect(2) = 1.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 721 PPPPPPPXXXXXXFFF 768
           PPPPPPP      F F
Sbjct: 5   PPPPPPPRRDFPAFPF 20


>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 APPPPPPP 741
           +PPPPPPP
Sbjct: 81  SPPPPPPP 88



 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 721 PPPPPPPXXXXXXFF 765
           PPPPPPP      F+
Sbjct: 119 PPPPPPPMPSSWDFW 133


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 703 FXXXGAPPPPPPP 741
           F   GAPPPPPPP
Sbjct: 78  FRPLGAPPPPPPP 90


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 23.8 bits (49), Expect(2) = 6.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 720 PPPPPPP 740
           PPPPPPP
Sbjct: 35  PPPPPPP 41



 Score = 23.4 bits (48), Expect(2) = 6.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 717 GPPPPPP 737
           GPPPPPP
Sbjct: 26  GPPPPPP 32


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 714 GGPPPPPPP 740
           GGPPPPPPP
Sbjct: 939 GGPPPPPPP 947


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 25.4 bits (53), Expect(2) = 8.2
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 718 APPPPPPP 741
           APPPPPPP
Sbjct: 53  APPPPPPP 60



 Score = 21.4 bits (43), Expect(2) = 8.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 721 PPPPPPPXXXXXXFFF 768
           PPPP PP      F F
Sbjct: 57  PPPPGPPPPHQPQFNF 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,747,844
Number of Sequences: 37544
Number of extensions: 177967
Number of successful extensions: 12768
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9299
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)