Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_B06
(1080 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.052
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.091
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.4
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 7.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.5 bits (83), Expect = 0.003
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPP 810
PPPPG G PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782
Score = 34.3 bits (75), Expect = 0.030
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPP 810
PPPP G PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPP 810
PP P GG PPPPPPP
Sbjct: 753 PPAPIMGG---PPPPPPP 767
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPPXXG 819
PPP G PPPPPP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAG 772
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -2
Query: 797 GGGXXXPPPPGGGGXXXXXXXXXGXPPPPP 708
GG PPPPG G G PPPPP
Sbjct: 759 GGPPPPPPPPGVAG--------AGPPPPPP 780
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPP 810
PPPP G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.052
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPP 810
PPPPG PPPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 30.3 bits (65), Expect = 0.49
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPP 810
PPPP G PPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPPXXG 819
PPPP G PPPPP G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.091
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +1
Query: 757 PPPPGGGGXXXPPPPPPPXXGXFLXXXXXXXXXXXXPPPPXXXXXXXXXXXPPP 918
PP G PPPPPP PPPP PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Frame = -2
Query: 818 PXXGGGGGGGXXXPPPP----GGGGXXXXXXXXXGXPPPPP 708
P G G PPPP G PPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 790 PPPPPPP 810
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.0 bits (47), Expect(2) = 1.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 760 PPPGGGGXXXPPPPPP 807
PPP G PP PP
Sbjct: 257 PPPSNGTVSSPPNSPP 272
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 3.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 775 GGXXXPPPPPPP 810
GG PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 778 GXXXPPPPPPPXXGXF 825
G PPPPPPP F
Sbjct: 303 GGLPPPPPPPPPSNDF 318
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 809 GGGGGGGXXXPPPPGGGG 756
GG GGG PP PGG G
Sbjct: 191 GGFGGGSGGPPPGPGGFG 208
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 757 PPPPGGGGXXXPPP 798
PPPP G G PPP
Sbjct: 129 PPPPAGFGRGAPPP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,046
Number of Sequences: 5004
Number of extensions: 35864
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 567771870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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