Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B05
         (1031 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    24   9.0  

>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 24.2 bits (50), Expect(2) = 9.0
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +2

Query: 668 FFFFFXXXXGGGGXXXXXXXXXXXPXXXXXXXXXPPPPP 784
           F F      GGGG           P         PPPPP
Sbjct: 18  FLFPMAGGGGGGGGCAPAAPACAPPPPPMCGCAPPPPPP 56



 Score = 22.6 bits (46), Expect(2) = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 770 PPPPPXXGXXKKKKKK 817
           PPPPP  G    +KK+
Sbjct: 56  PPPPPMCGCGCGRKKR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,877
Number of Sequences: 27780
Number of extensions: 248619
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2730644118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)