Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_B04
(976 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 3.2
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 4.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 4.2
09_02_0603 - 11150739-11150746,11150791-11151340 29 4.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.6
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 9.8
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 28 9.8
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 492 KXKXXPPPPPXGXXFLKXGXPPPPXXK 412
K PPPPP G K G PPPP K
Sbjct: 360 KGPSPPPPPPPGG---KKGGPPPPPPK 383
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 476 PPPPPXGXXF*XGGPPPP 423
PPPPP G GGPPPP
Sbjct: 366 PPPPPGGK---KGGPPPP 380
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.9 bits (64), Expect = 3.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 476 PPPPPXGXXF*XGGPPPP 423
PPPPP GGPPPP
Sbjct: 370 PPPPPGAAGRGGGGPPPP 387
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 473 PPPPXGXXF*XGGPPPPXXXKKXXXGGGAPP 381
PPPP G GG PPP G PP
Sbjct: 370 PPPPPGAAGRGGGGPPPPALPGGPRARGPPP 400
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 476 PPPPPXGXXF*XGGPPPP 423
PPPPP G GGPPPP
Sbjct: 625 PPPPPPGKP---GGPPPP 639
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 476 PPPPPXGXXF*XGGPPPP 423
PPPPP G GGPPPP
Sbjct: 930 PPPPPPGKP---GGPPPP 944
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = -2
Query: 477 PPPPPXGXXFL---KXGXPPPP 421
PPPPP G F+ + G PPPP
Sbjct: 44 PPPPPPGSTFVPLPQSGVPPPP 65
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -3
Query: 476 PPPPPXGXXF*XGGPPPPXXXKKXXXGGGAPP 381
PPPPP G PPPP + GG PP
Sbjct: 1149 PPPPPVGGLGGPPAPPPPAGFR-----GGTPP 1175
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 424 GGGGPPF*KXXPXGGGGG 477
GGGGPP+ GGGGG
Sbjct: 64 GGGGPPYYGGGGGGGGGG 81
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -3
Query: 440 GGPPPPXXXKKXXXGGGAPPXL 375
GGPPPP GGG+P L
Sbjct: 164 GGPPPPAPTSGGGGGGGSPTAL 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,692
Number of Sequences: 37544
Number of extensions: 385035
Number of successful extensions: 1516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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