Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_B02
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    36   0.005
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    28   1.6  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   2.8  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    26   6.4  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    26   6.4  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 363 KKTKRKRNSXLPPNADLSKPPDPERWLPKYERT 265
           KKT RKR    P + +    PDP+RW+PK +RT
Sbjct: 514 KKT-RKRRKPTPKSFNPKATPDPQRWIPKRDRT 545


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = -3

Query: 498 SSRRKSIXTPLESSKWMMGAEVVKKTVQSKQEQSPGTPGXELGQKKKTKRKRNSXLPPNA 319
           SS+RKS    L S K     EV K++  SKQ+         + +  K    +N+    N 
Sbjct: 274 SSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKTTNR 333

Query: 318 DLSKPPDPERWLPKYERTAYR 256
           D        +  PK  +++ +
Sbjct: 334 DEDSKGKKAKASPKVSQSSLK 354


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 307
           D+PW P   SR+  +    A RS FG +++   G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 113 RPRALGSASNSRRRKARDVNGSSTVINDICTLKKKKK 3
           RP+     S+S +R AR    S+T+  +   LKKK+K
Sbjct: 14  RPKPSLDRSDSTKRAARAARFSTTLDANFQALKKKRK 50


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 363 KKTKRKRNSXLPPNADLSKPPDPERWL-PKYERTAYRKR 250
           KK ++K      P+AD S  PD ER +    +R  YRK+
Sbjct: 88  KKVEKKMFMGKDPSADTSFLPDAEREIRENAKRAEYRKQ 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,383
Number of Sequences: 5004
Number of extensions: 30531
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)