Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_A16
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.33
07_03_1579 - 27876472-27877347,27877839-27878285 31 1.3
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 4.1
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 29 5.4
01_06_0695 - 31292622-31293317 28 7.2
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.5
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 28 9.5
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 28 9.5
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>07_03_1579 - 27876472-27877347,27877839-27878285
Length = 440
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 249 CETRLVKSHCLXPPDSRGLHSEHILXRIRLXWLXALK 359
C + + CL PPD G E L + + W+ A+K
Sbjct: 90 CRALMARLVCLPPPDQDGDEDEETLGALLVFWVKAMK 126
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/88 (27%), Positives = 31/88 (35%)
Frame = +3
Query: 48 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLR 227
+RS+ A R +S D P HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 228 RRVSRFECETRLVKSHCLXPPDSRGLHS 311
++ S R S P S+GL S
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKGLVS 588
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Frame = -2
Query: 480 FXXKKKXPKXREPHFRTLVXXXGRTAXGSXLPSXGLXXEXLL-RPEASXAESGQGYAHCG 304
+ K P+ R P F LV + P L + L RPE + A CG
Sbjct: 384 YFPKPLPPRSRRPSFPPLVQQPIAMSSWPPPPPVQLSMQFLPPRPEPAAAARTSICCTCG 443
Query: 303 APESREAXNNVTLLVAFRIQNARRDVEAHLD 211
P + A N L + R+ A V H D
Sbjct: 444 VPMAPNAANTCALCIRSRVDIA-AGVPRHAD 473
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 27 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 21 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 200
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 201 D 203
+
Sbjct: 791 E 791
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 27.9 bits (59), Expect = 9.5
Identities = 31/101 (30%), Positives = 43/101 (42%)
Frame = +3
Query: 15 SDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 194
S ES R++HD+ P RK D EP+ +L P R RV+ D
Sbjct: 220 SKESQDISPPRRRTRHDSEEPQDLSPPRRKGRHDSEEPK---DLLPPWR----RVRH--D 270
Query: 195 SIDLRDPNGLRRRVSRFECETRLVKSHCLXPPDSRGLHSEH 317
S + +D + RRR +R + E + L PP R H H
Sbjct: 271 SEEPKDLSPPRRR-TRHDSE----EPEDLSPPRRRTRHDSH 306
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3
Query: 15 SDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 194
+DESP A S R PS RQ++++ D R + E P V K
Sbjct: 495 ADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSKLEG 550
Query: 195 SIDLRDPNGL----RRRVSRFECETRLVKSHCLXPP 290
+ PN VSR E ET+ K + + P
Sbjct: 551 ETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,547,649
Number of Sequences: 37544
Number of extensions: 302574
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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