Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_A14
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   1.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    24   1.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.9  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 316 LNGQLRSVFIRDENASKEMKIHPKAVKGDKNQV 218
           L+GQ R  F +DE     MK    A K  KN V
Sbjct: 54  LDGQFRGEFPQDERLMCYMKCIMIATKAMKNDV 86


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 316 LNGQLRSVFIRDENASKEMKIHPKAVKGDKNQV 218
           L+GQ R  F +DE     MK    A K  KN V
Sbjct: 28  LDGQFRGEFPQDERLMCYMKCIMIATKAMKNDV 60


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 734 LPRSXWWSTCREPS 693
           + R  WWS  REP+
Sbjct: 40  IKRKRWWSRPREPA 53


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 721 GGGVPAGSHRDTVWRFPEPLRSKVLKTCRESR 626
           G   PA  H D    F +PL  ++ KT  ++R
Sbjct: 489 GPASPAYVHEDVSPTFEKPLVREIEKTIDDAR 520


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 669 SGNLHTVSRWLPAGTPPPTSGK 734
           SG+++TV+ W P     PT  K
Sbjct: 565 SGSINTVAEWEPPRALWPTEWK 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,313
Number of Sequences: 438
Number of extensions: 3804
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)