Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_A03
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0427 - 3245999-3246193,3246281-3246480,3246572-3246676,324...    28   9.1  

>01_01_0427 -
           3245999-3246193,3246281-3246480,3246572-3246676,
           3246968-3247052,3247958-3248325,3248405-3248639,
           3248807-3248968
          Length = 449

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 60  SFTLTLVGELAGLNRRVANTDPSKSSASQNLPPDRKRDPL 179
           SF   L GEL  +     N DPSK  A+    P + + P+
Sbjct: 43  SFHGNLEGELETIKNGYINQDPSKIEATPQADPSKGKAPI 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,741
Number of Sequences: 37544
Number of extensions: 216976
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)