Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_P20
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    33   0.22 
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    32   0.67 
03_05_0183 - 21681673-21682524                                         29   3.6  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.3  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.3  
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496...    28   8.3  
09_02_0014 - 2977053-2977296,2977719-2978098                           28   8.3  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.3  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 6    EGSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLELDS 161
            +G+  PR +  D  EW N  PT+   ++ + +PRE     Q+ K  +  L+S
Sbjct: 1392 QGNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 427 PPQSNSPPGSVLEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 269
           PP +    GS  +   +G L+   ER RH +  T HA  E P   R  RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 636 SQAFIATLLFDPSMSALPIIAXQNSPS 716
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 340 TTXHAWNETPCARRYY 293
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 348 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 437
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>10_02_0074 -
           4965688-4966638,4966877-4966906,4968656-4968927,
           4969092-4969329
          Length = 496

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 6   EGSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERA 116
           EGS    H+  D H+W  E  T+P        P E A
Sbjct: 460 EGSNQGLHICKDGHQWPLEESTMPTVECVLQHPGESA 496


>09_02_0014 - 2977053-2977296,2977719-2978098
          Length = 207

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 120 ENQRGKKTLLELDSSSGIVRRHXRCXISGRSFRAIVAEKPLLSLFHYLLGWAEAVRGR 293
           E++RG  T  E+++ + + R      I  R    ++ ++PL+ +F  L G A     R
Sbjct: 59  EDRRGTVTTDEIETPNLLTRVEIEDTIIAREAELLIPKRPLILVFVVLFGSASTTTSR 116


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 427 PPQSNSPPGSVLEPDHAGVLNGDE 356
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,943,270
Number of Sequences: 37544
Number of extensions: 415145
Number of successful extensions: 1220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)