Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_P18
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   287   6e-78
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   281   4e-76
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   4.7  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   6.2  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.2  
06_03_0543 + 21967787-21970261                                         29   6.2  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  287 bits (705), Expect = 6e-78
 Identities = 132/224 (58%), Positives = 168/224 (75%)
 Frame = +1

Query: 52  ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWE 231
           ++A   G    L+  E+DV  MLAA  HLG +N +F ME YVYKRR+DG ++INL +TWE
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 232 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 411
           KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 412 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 591
            EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180

Query: 592 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQ 723
           LLAR VL++RG +    +WDV+VDLFFYRDPE +++ E++A  Q
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  281 bits (690), Expect = 4e-76
 Identities = 127/209 (60%), Positives = 160/209 (76%)
 Frame = +1

Query: 85  LALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVX 264
           L+  E+D+  MLAA  HLG +N +F ME YVYKRR DG ++INL +TWEKL LAAR +V 
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 624
             DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191

Query: 625 VLPRDQRWDVVVDLFFYRDPEXSEKDEQQ 711
            +    +WDV+VDLFFYRDPE +++ E++
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/78 (28%), Positives = 27/78 (34%)
 Frame = +3

Query: 105 CHQNACCNHPSWGRKC*LPXGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXHREPR*C 284
           CH   C   P  GR+   P G     +      CD  A+  G TC     C  H+ P  C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378

Query: 285 VRHLITALRSACCTEVCR 338
            R           T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 152  TFSAPRWVVAASILVTSSSLRASTSNP 72
            TF A RWV+AA   V  + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 580 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 669
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,934,873
Number of Sequences: 37544
Number of extensions: 585836
Number of successful extensions: 1570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)