Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_P15
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282...    30   2.1  
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    29   3.7  
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555           28   8.6  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.6  

>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
            20928549-20928788,20928884-20928978,20929087-20929434,
            20929824-20930042,20930422-20930487,20931191-20931362,
            20931456-20931703,20931933-20932073,20932238-20932330,
            20932421-20932471,20933571-20933693,20933793-20934035,
            20934131-20934211,20935245-20935340,20935535-20936320,
            20936443-20937012,20937322-20937427,20938102-20938206,
            20938311-20938432,20939321-20939413,20940081-20940104
          Length = 1685

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 480  LGQLSXLHRNWSANVQALYXRXRSRY*IHGRGERSPRRWLQPRLAVPRQAS-TSVPRTPA 304
            LG L     +W A+ +A+     SR     RG RSP + +Q   AV   A+ TS P+   
Sbjct: 1264 LGSLLLSSEDWMASHKAVRVTSLSRGYTSNRGLRSPHQ-IQACAAVSCYATCTSYPKFSF 1322

Query: 303  KXCSPIPLRSXSVVCR 256
              C    L   + +CR
Sbjct: 1323 PTCEDQYLSGYNAICR 1338


>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/89 (26%), Positives = 34/89 (38%)
 Frame = -1

Query: 311 HQPSXAAPFPCVPXQSFVDPIHLKICQYPHGGLGLTNVSMSQMAGSG*LRFWSAGGDSRS 132
           H P  AA  P VP +    P  L +     GG GL   S S +A  G       GG    
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGGSHGL 65

Query: 131 YVARSESIMRDSDVAFSHSAALAIAQVRR 45
           + + + +     D+++     L I   RR
Sbjct: 66  HKSGTATTGLPFDISWRRQDRLQIVVSRR 94


>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
          Length = 614

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 183 GRVRLTTILECGGRLPIVRCEERVDHEGQ 97
           GRVR+    EC   + + RC+E V  +G+
Sbjct: 240 GRVRVVVRSECEPMMDLFRCDEAVGRDGE 268


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,892
Number of Sequences: 37544
Number of extensions: 376984
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)