Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_P13
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    33   0.39 
03_05_0934 - 28935728-28935859,28936000-28936122,28936172-289362...    29   3.6  
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692     29   6.3  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   6.3  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.3  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.4  

>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -3

Query: 511 PPQSNSPPGSVLEPDHAGVLNG-DERFRH--VITXHAWNETPCARRYYRPRTASAQ 353
           PP +    GS  +   +G L+   ER RH   +T HA  E P   R  RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


>03_05_0934 -
           28935728-28935859,28936000-28936122,28936172-28936284,
           28936363-28936430,28936517-28936600,28936937-28936980,
           28937061-28937204,28937518-28937582,28937722-28937814,
           28938132-28938262,28938375-28938394,28938904-28938987,
           28939157-28939330,28940106-28940195,28940293-28940364,
           28941318-28941365,28941458-28941570,28942786-28942849,
           28942943-28943016,28943162-28943201
          Length = 591

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 331 ESSGFSATIARNDLPLMXHLSCLLTMPD*SQAQAGSSFPADSPKPVP 191
           + +GFS TI R+D  ++  L      P       G+  PA  P PVP
Sbjct: 301 DMAGFSITIMRSDENILQRLDAPTKAPAWPVGSEGNRPPAKIPVPVP 347


>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
          Length = 455

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 355 GRKRCAVD-NIGGRTVFRSKRAX**RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNN 531
           GR+ C+VD  +GG   F         GG A+ R+ +  +P +G   A + TGA   + ++
Sbjct: 48  GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGAA-AAASS 98

Query: 532 AGVLRPAQRGXKPRVEQKGQKLA*SXC 612
           A   RP  RG     +Q+    A   C
Sbjct: 99  APAKRP--RGAAAAGQQQCPSCAVDGC 123


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 124  DAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLELDS 246
            D  EW N  PT+   ++ + +PRE     Q+ K  +  L+S
Sbjct: 1403 DEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIFILNS 1443


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 432 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 521
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 511 PPQSNSPPGSVLEPDHAGVLNGDE 440
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,853
Number of Sequences: 37544
Number of extensions: 400459
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)