Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_P11
(829 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.2
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 7.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 7.5
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.9
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 271 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 441
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 442 DVTVEGGNVLATPSSS 489
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 525 SHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPL-SSXAPS 692
S PP+R + P + PP + P PS P P AP PPL +S APS
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPS 1742
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.9
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +1
Query: 271 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 450
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 451 VEGGNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 591
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.1 bits (57), Expect = 3.2
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +1
Query: 283 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 456
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 457 GGNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 591
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 253 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 366
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 530 PSPAISATSTRSSN---PRFHTPTTPD 601
P P+IS T+T SS H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 533 SPAISATSTRSSNPRFHTPTTPDLTSIS 616
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 334 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 423
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIP-DSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSXAP 689
P H P P H P + + PP P +P P + E + PP P
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268
Query: 690 SAYLTPSXTGHG*KGFRPP 746
++ P H PP
Sbjct: 269 GEHMPPPPMHHEPGEHMPP 287
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIP-DSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSXAP 689
P H P P H P + + PP P +P P + E + PP P
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 281
Query: 690 SAYLTPSXTGHG*KGFRPP 746
++ P H PP
Sbjct: 282 GEHMPPPPMHHEPGEHMPP 300
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIP-DSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSXAP 689
P H P P H P + + PP P +P P + E + PP P
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 294
Query: 690 SAYLTPSXTGHG*KGFRPP 746
++ P H PP
Sbjct: 295 GEHMPPPPMHHEPGEHMPP 313
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIP-DSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSXAP 689
P H P P H P + + PP P +P P + E + PP P
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 307
Query: 690 SAYLTPSXTGHG*KGFRPP 746
++ P H PP
Sbjct: 308 GEHMPPPPMHHEPGEHMPP 326
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIP-DSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSXAP 689
P H P P H P + + PP P +P P + E + PP P
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 320
Query: 690 SAYLTPSXTGHG*KGFRPP 746
++ P H PP
Sbjct: 321 GEHMPPPPMHHEPGEHMPP 339
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 471 QHIASFNCDVSSSPTKVNCDWYFEARGG 388
QHIA++ +SSS + W F A GG
Sbjct: 2027 QHIAAYVYAISSSTGSLYFAWNFGAEGG 2054
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 514 LMHQATLPCDLGYINPIIKSPIPYTNHP 597
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,908
Number of Sequences: 5004
Number of extensions: 59376
Number of successful extensions: 219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -