Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_P11
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1310 + 29238644-29240260 39 0.006
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 0.85
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.85
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 31 1.1
01_06_1224 - 35508842-35510404 31 1.1
12_02_1226 - 27182423-27182768,27182855-27183765 30 2.0
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 30 2.0
12_02_1174 - 26696869-26698191 30 2.6
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 30 2.6
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 30 2.6
02_04_0452 + 23044190-23045227 29 3.4
04_01_0041 - 464695-464850,467485-469029 29 6.0
01_06_1682 - 39130696-39131705,39132355-39132583 29 6.0
01_05_0227 - 19512866-19514983 29 6.0
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 28 7.9
>06_03_1310 + 29238644-29240260
Length = 538
Score = 38.7 bits (86), Expect = 0.006
Identities = 28/93 (30%), Positives = 39/93 (41%)
Frame = +3
Query: 468 AGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXE 647
A HPF S ++ P + P R+ L H+ P H PP+ P P P +P
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPL--APHRSPLPHHMPPRRTPPTPPPPSSPTPSH 408
Query: 648 FAPGLKPPLSSXAPSAYLTPSXTGHG*KGFRPP 746
P PP S +P + + PS + G PP
Sbjct: 409 LPP--PPPTYSESPKSSMPPSTSPPSSHGASPP 439
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 31.5 bits (68), Expect = 0.85
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPL---SSX 683
P A+ P + + P P ++ +PP P PS P P+Y + +PP+ +S
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNV-RPPSPYMPPPSGPAPPFYGQNQSMYEPPVGRPNSG 439
Query: 684 APSAYLTPSXTGHG*KGFRPPY 749
P +Y G GF Y
Sbjct: 440 PPPSYGAGGYGPQGGSGFSESY 461
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 513 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKP 668
P S PP + H P Q+P PP P PS+P P +AP +P
Sbjct: 284 PTLQSQPPSQYPGHLPHSQVPPV---PPSA--PVPSVPALPRDPYYAPPAQP 330
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 539 AISATSTRSSNPRFHTPTTP 598
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 606 HPFPSIP*TPY-YXEFAPGLKPPLSSXAP-SAYLTPSXTGHG*KGFRPP 746
+P+P PY Y ++ PP P SAYL+PS + HG PP
Sbjct: 11 YPYPPPQQYPYPYGQYPYQYPPPQQQPPPPSAYLSPSRSFHGYPSAPPP 59
>01_06_1224 - 35508842-35510404
Length = 520
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Frame = +3
Query: 513 PYASSH----PPLRS--RLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPP 671
PY+ SH PPL+ L+ PD H PP P P + P EF GL PP
Sbjct: 25 PYSPSHADLSPPLQEVYSLYNPDDPPASETHLPPYAPPPAPVVSELPDDLEF--GLHPP 81
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 495 YYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPL 674
YY ++P PP + + Q D+ +P + +P P S P Y APG+ P
Sbjct: 154 YYATTQPKKPEEPPTVAAV-QKDNCVPPAAPKPAVPATPSTSPPSNKEYAPAAPGVVPVN 212
Query: 675 SSXAPSA 695
+P+A
Sbjct: 213 QPSSPAA 219
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 534 PLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXE-FA-PGLKPPLSSXAPSAYLTP 707
P R+R+ +PD + D + + P+ S P P Y + F+ P PP +PS L P
Sbjct: 333 PARARVLRPDELLLDHYYYHSSSSDPYYSTPILPPYGDAFSPPNPPPPPPPMSPSCLLPP 392
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 513 PYASSHPPLRSRLH-QPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSXAP 689
P PP R+R +P H+ P QPP + P P P P P +KPP+ P
Sbjct: 121 PVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPP-PPPPPPPPPPPRPPSVKPPVVQPKP 179
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 525 SHPPLRSRLHQPDHQIPDSIHQPP-QT*HPFPSIP*TPYYXEFAPGLKPPLSSXAPS 692
S PPLRS QP P QPP T P + P +P + AP PP+ + P+
Sbjct: 584 SPPPLRSPPRQPTPP-PSPSQQPPLPTPQPVQASPTSP-TKQHAPPAPPPVQTSPPT 638
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 521 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 625
I PPSPA + S+R S +PR F TP T T+ S +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 474 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 596
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 238 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 414
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 415 TVD 423
+D
Sbjct: 100 PLD 102
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/67 (31%), Positives = 29/67 (43%)
Frame = +3
Query: 489 SHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKP 668
S Y + S P+ PPL ++ P P + PP H +PS P + Y+ P
Sbjct: 192 SPYQYPSPPFNYKSPPLPNQFSPP----PFNKFPPPS--HQYPSPPQSSYHSPPPYQYTP 245
Query: 669 PLSSXAP 689
P S AP
Sbjct: 246 PNSYQAP 252
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 455 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 363
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/62 (32%), Positives = 24/62 (38%)
Frame = +3
Query: 504 RSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYYXEFAPGLKPPLSSX 683
R+ P A + PP R+ Q H P P T P P TP F P P +
Sbjct: 287 RTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASPSPPYG-TPLLQPFPPPNPSPSLAS 345
Query: 684 AP 689
AP
Sbjct: 346 AP 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,840,559
Number of Sequences: 37544
Number of extensions: 475343
Number of successful extensions: 1399
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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