Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_P10
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 198 1e-51
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 197 1e-51
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 28 1.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.4
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 5.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 198 bits (482), Expect = 1e-51
Identities = 89/152 (58%), Positives = 120/152 (78%)
Frame = +1
Query: 205 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 384
+ +L P SK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 57 VRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116
Query: 385 RFYKNWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQK 564
RFYKNW+K KKKAFTK + K+ + +SI ++ + +YCSVVRV+AHTQ++ QK
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174
Query: 565 KAHIMEIQLNGGTIXDKVKWATXHLEKPIPVR 660
KAH+MEIQ+NGG++ DKV+WA H EK + ++
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKTVDIK 206
Score = 108 bits (260), Expect = 9e-25
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +3
Query: 51 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 230
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 231 K 233
K
Sbjct: 66 K 66
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/62 (58%), Positives = 40/62 (64%)
Frame = +2
Query: 662 SVFAQDEMIDCIXXXXXXXXXXXXSRWHTXXLPRKTHXGLRKVACIGAWHPSRVLFTVPR 841
S F Q+EMID I +RW T LPRKTH GLRKVACIGAWHP+ V +TV R
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVAR 266
Query: 842 AG 847
AG
Sbjct: 267 AG 268
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 197 bits (481), Expect = 1e-51
Identities = 88/152 (57%), Positives = 120/152 (78%)
Frame = +1
Query: 205 LENLTVPVSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 384
+ +L P SK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 57 VRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116
Query: 385 RFYKNWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQK 564
RFYKNW+K KKKAFTK + K+ + +SI ++ + +YCSVVRV+AHTQ++ QK
Sbjct: 117 RFYKNWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQK 174
Query: 565 KAHIMEIQLNGGTIXDKVKWATXHLEKPIPVR 660
KAH+MEIQ+NGG++ DKV+WA H EK + ++
Sbjct: 175 KAHLMEIQVNGGSVADKVEWAREHFEKTVDIK 206
Score = 108 bits (260), Expect = 9e-25
Identities = 46/61 (75%), Positives = 53/61 (86%)
Frame = +3
Query: 51 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 230
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 231 K 233
K
Sbjct: 66 K 66
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/62 (58%), Positives = 40/62 (64%)
Frame = +2
Query: 662 SVFAQDEMIDCIXXXXXXXXXXXXSRWHTXXLPRKTHXGLRKVACIGAWHPSRVLFTVPR 841
S F Q+EMID I +RW T LPRKTH GLRKVACIGAWHP+ V +TV R
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVAR 266
Query: 842 AG 847
AG
Sbjct: 267 AG 268
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -1
Query: 212 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVLKIF 45
F N VG G+I D S + +R+VF D +G L ++SH +P + V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 39 RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 158
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 11 LVXDCLPAMSHRKFSAPRSWVYGILSQKEVPS 106
L+ D L + H++ S +W + S K+VPS
Sbjct: 13 LITDDLKLVEHQEVSNGATWASALQSTKDVPS 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,649
Number of Sequences: 5004
Number of extensions: 70554
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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