Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_P07
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   221   1e-58
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   216   3e-57
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    31   0.28 

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  221 bits (540), Expect = 1e-58
 Identities = 109/192 (56%), Positives = 135/192 (70%), Gaps = 2/192 (1%)
 Frame = +3

Query: 156 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSSW 335
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAY NV+ ARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 336 RVISSIEQK--TXGSXRKQQMAKEYXVKVQKXLTEICYDVLGLLDKHLIPKASNPXSKVF 509
           R++SSIEQK  + G+  + ++ KEY  K+++ L  IC D+L +L+KHLIP A++  SKVF
Sbjct: 63  RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122

Query: 510 YLKMKXDYYRYLAXVATGETXHSVVQDSXKAYXDAFEIXKAKMQPTHPIRLGLALNFSXF 689
           Y KMK DYYRYLA  A GE        S + Y  A EI  A++ PTHPIRLGLALNFS F
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182

Query: 690 YYEILNSPXKAC 725
           YYEILNSP +AC
Sbjct: 183 YYEILNSPDRAC 194


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  216 bits (528), Expect = 3e-57
 Identities = 108/194 (55%), Positives = 137/194 (70%), Gaps = 2/194 (1%)
 Frame = +3

Query: 153 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSS 332
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAY N++ ARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 333 WRVISSIEQK--TXGSXRKQQMAKEYXVKVQKXLTEICYDVLGLLDKHLIPKASNPXSKV 506
           WR+ISSIEQK  + G+ R+  + KEY  K++  L++IC+DVL +L+KHLIP A+   SKV
Sbjct: 61  WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120

Query: 507 FYLKMKXDYYRYLAXVATGETXHSVVQDSXKAYXDAFEIXKAKMQPTHPIRLGLALNFSX 686
           FY KMK DYYRYLA    GE        S +AY  A +I  A++ PT P+RLGLALNFS 
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSV 180

Query: 687 FYYEILNSPXKACN 728
           FYYEIL+SP  AC+
Sbjct: 181 FYYEILDSPESACH 194


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = +3

Query: 135  PLPSSTMSVDKE--ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXN 308
            P+ S TMS      E + R +     + Y+ MA  + E  E   ++ +    LLS  Y N
Sbjct: 2997 PIMSITMSDSSAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056

Query: 309  VVXARRSSWRVISSIEQKTXGSXRKQQMAKEYXVKVQKXLTEIC 440
                    +R+ + +E+          +  EY   +++ L + C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,663
Number of Sequences: 5004
Number of extensions: 50888
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)