Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_O19
(892 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 51 1e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 49 5e-08
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 49 5e-08
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 46 4e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 46 4e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 44 2e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 3e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 40 3e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 35 9e-04
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 32 0.006
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 31 0.014
DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein. 25 0.93
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 24 1.6
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 4.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.6
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 51.2 bits (117), Expect = 1e-08
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 8/157 (5%)
Frame = +2
Query: 128 IASAAECENATSLSLMIDSLLATYDRESPPHSK----IVVNLTLHLRHA---NIRESEST 286
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 287 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYALRARV 463
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G + +
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAI 126
Query: 464 SNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
+ L S+ P D TC KF
Sbjct: 127 LHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 163
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 49.2 bits (112), Expect = 5e-08
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V++NGS L+ G S T P D C KF
Sbjct: 153 GTYQTNVVVTHNGSC-LYVPPGIFKSTCKIDITWFPFDDQHCDMKF 197
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 49.2 bits (112), Expect = 5e-08
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V++NGS L+ G S T P D C KF
Sbjct: 153 GTYQTNVVVTHNGSC-LYVPPGIFKSTCKIDITWFPFDDQHCDMKF 197
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V++NGS L+ G S T P D C KF
Sbjct: 85 GTYQTSVVVTHNGSC-LYVPPGIFKSTCKIDITWFPFDDQHCDMKF 129
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 46.8 bits (106), Expect = 3e-07
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V+++GS L+ G S T P D C KF
Sbjct: 85 GTYQTSVVVTHDGSC-LYVPPGIFKSTCKIDITWFPFDDQHCDMKF 129
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 46.4 bits (105), Expect = 4e-07
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 10/174 (5%)
Frame = +2
Query: 146 CENATSLSLMIDS---LLATYDRESPPHSKIV--VNLTLHLRHANIRESESTVRILADLQ 310
C++ TS S + L YDR+ P K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 311 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL--LNAAATTAGDYALRARVSNNGSV 481
+ W L+W + E+ ++ V S +W PD+V+ + + ++ V N+G++
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTI 147
Query: 482 FLHKALGH*HSNFLCSY--TIGPTDMXTCTFKFRXLAMHNSXEXGLSPIXPXEI 637
+ +C Y T P D+ CT + H S E L+ + +I
Sbjct: 148 LCVPFTTY---TPVCEYDHTWWPYDILNCTIHIASWS-HGSNEIKLNSLDTEQI 197
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 46.4 bits (105), Expect = 4e-07
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 7/157 (4%)
Frame = +2
Query: 125 AIASAAECENATSLSLMIDSLLATYD-RESPPHSK---IVVNLTLHLRHA-NIRESESTV 289
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 290 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARV 463
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 464 SNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
NNG+ L+ G S T P D C KF
Sbjct: 131 KNNGTC-LYVPPGIFKSTCKIDITWFPFDDQRCEMKF 166
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 46.0 bits (104), Expect = 5e-07
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Frame = +2
Query: 116 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----HSKIVVNLTLHLRH---ANIRE 274
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 275 SESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 424
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 65 QIMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V+++GS L+ G S P D C KF
Sbjct: 85 GTYQTSVVVTHDGSC-LYVPPGIFKSTCKMDVAWFPFDDQHCDMKF 129
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V+++GS L+ G S P D C KF
Sbjct: 85 GTYQTSVVVTHDGSC-LYVPPGIFKSTCKIDIAWFPFDDQHCDMKF 129
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V+++GS L+ G S P D C KF
Sbjct: 85 GTYQTSVVVTHDGSC-LYVPPGIFKSTCKMDIAWFPFDDQHCDMKF 129
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +2
Query: 263 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 436
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 437 GDYALRARVSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
G Y V+++GS L+ G S P D C KF
Sbjct: 85 GTYQTSVVVTHDGSC-LYVPPGIFGSTCKIDIAWFPFDDQHCDMKF 129
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 44.4 bits (100), Expect = 1e-06
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Frame = +2
Query: 146 CENATSLSLMIDSLLATYDRESPPHSKIVVNLTLHLR-------HANIRESESTVRILAD 304
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 305 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 478
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 479 VFLHKALGH*HSNFLCSYTIGPTDMXTCTFKF 574
V K S+ P D TC KF
Sbjct: 137 V-EWKPPAIYKSSCEIDVEYFPFDEQTCVMKF 167
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 44.0 bits (99), Expect = 2e-06
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Frame = +2
Query: 224 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 397
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 398 PDVVLLNAAATTAGDYALRAR----VSNNGSVFLHKALGH*HSNFLCSYTIGPTDMXTCT 565
PD+VL N A G+Y +R + + NG V + S+ T P D TC
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIY-QSSCTIDVTYFPFDQQTCI 166
Query: 566 FKF 574
KF
Sbjct: 167 MKF 169
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 43.2 bits (97), Expect = 3e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +2
Query: 173 MIDSLLATYDRESPPHSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 337
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 338 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 424
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 42.7 bits (96), Expect = 4e-06
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Frame = +2
Query: 173 MIDSLLATYDRESPP--HSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 337
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 338 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVFLHKALGH*H 511
W E+G L V S+ +WRPD+VL NA A +A + + G V K
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLV-EWKPPAIYK 150
Query: 512 SNFLCSYTIGPTDMXTCTFKF 574
S+ P D TC KF
Sbjct: 151 SSCEIDVEYFPFDEQTCVLKF 171
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 8e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 173 MIDSLLATYDRESPP--HSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 337
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 338 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 424
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 39.9 bits (89), Expect = 3e-05
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +2
Query: 152 NATSLSLMIDSLLATYDRESPPH---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 319
N +++S ++D+LL YD P V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 320 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 418
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 5e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 227 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 403
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 404 VVLLNAA 424
+L N A
Sbjct: 92 TILYNNA 98
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 35.1 bits (77), Expect = 9e-04
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +2
Query: 161 SLSLMIDSLLATYDRES-PPHSK---IVVNLTLHLRHAN-IRESESTVRILADLQMNWID 325
++++++++LL Y+ P H K VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 326 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 418
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 32.3 bits (70), Expect = 0.006
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Frame = +2
Query: 152 NATSLSLMIDSLLATYDRESPPH---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 319
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 320 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 472
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 473 GSV 481
GS+
Sbjct: 124 GSI 126
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 31.1 bits (67), Expect = 0.014
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Frame = +2
Query: 152 NATSLSLMIDSLLATYDRESPPH---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 319
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 320 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 472
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 473 GSV 481
GS+
Sbjct: 124 GSI 126
>DQ435327-1|ABD92642.1| 145|Apis mellifera OBP10 protein.
Length = 145
Score = 25.0 bits (52), Expect = 0.93
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 92 YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 196
Y ILL L+TC I S + C T S + D ++AT
Sbjct: 3 YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 24.2 bits (50), Expect = 1.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 464 SNNGSVFLHKALGH 505
+NNG +F H LGH
Sbjct: 267 NNNGDMFCHTGLGH 280
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 567 NVQVCMSVGPXV*LHRKLEC*CPSALCRK 481
NVQ+C + + K C C + CR+
Sbjct: 652 NVQLCSEISESYSSNNKTLCKCDAQNCRR 680
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 370 PSAAAPFPCVPTQS 329
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,696
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 57
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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