Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O16
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   2.5  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    27   4.4  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   4.4  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    26   5.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   7.7  

>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 176 DEEGEFLLRVFSEKDNNMAXNDEDIGMGDVDDRVKELAPDPEPADPVREFFTRLAGSDGE 355
           DE+ ++++  F E +      DE+     +  R +E   + E A    + F     SDGE
Sbjct: 361 DEQRDYVMETFHEDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADF--SDGE 418

Query: 356 VD 361
            D
Sbjct: 419 AD 420


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 373 EFLPVDLPVGAGEPREELTD 314
           E +PV++PVG G+P + +T+
Sbjct: 200 EIVPVEVPVGRGKPNKLVTE 219


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 153 ITYEPGSNLNLALTSLRLMKACDLPTDALYLK 58
           + Y  G +L+ A   L L K CD PTD L LK
Sbjct: 537 VEYYYGKSLHEAALDL-LTKLCDEPTDTLSLK 567


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 299 EPADPVREFFTRLAGSDGEVDWQELKEIL 385
           E +DP+   F    GS GE DWQE ++ L
Sbjct: 74  ELSDPLPAEFYFKKGSVGEKDWQERQKTL 102


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 158 PSTFDPDEEGEFLLRVFSEKDNNMAXND 241
           PST++PD+ GE  ++V  + D+     D
Sbjct: 599 PSTYEPDKRGEGWIKVKQDYDDEFESLD 626


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,830
Number of Sequences: 5004
Number of extensions: 19238
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)