Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O16
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0359 + 24679907-24680146,24680511-24680939,24681111-246824...    30   2.0  
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728...    30   2.7  
09_02_0126 + 4582214-4582453,4582539-4584201,4584244-4584584,458...    29   3.5  
03_06_0193 + 32243458-32243556,32243566-32244273                       29   6.2  

>04_04_0359 +
           24679907-24680146,24680511-24680939,24681111-24682402,
           24682486-24682737,24682818-24682928,24683016-24683076,
           24683178-24683270,24683348-24683533
          Length = 887

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 293 DPEPADPVREFFTRLAGSDGEVDWQELKEILDYAMGEELAMRH 421
           D +   P    +  ++  D EV W+ELK+I  +  G E A+R+
Sbjct: 71  DKDYIPPKEGDWDHVSNGDKEVIWKELKKIFQFPDGSEAAVRN 113


>10_08_0747 -
           20272157-20272456,20272538-20272664,20272770-20272843,
           20272928-20272971,20273697-20276223
          Length = 1023

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 113 VSARFKFEP-GSYVIVPSTFDPDEEG---EFLLRVFSEKDNNMAXNDEDIGMGDVDDRVK 280
           +SARF     G YV++P +F P   G   EFLL      + ++A   E  G+  V+    
Sbjct: 123 LSARFSVSAMGRYVLLPPSFSPPRAGVVREFLLPSDGSGEFDVAFTPESGGLAFVN--AI 180

Query: 281 ELAPDPE 301
           EL P P+
Sbjct: 181 ELFPAPQ 187


>09_02_0126 +
           4582214-4582453,4582539-4584201,4584244-4584584,
           4584809-4584999,4585080-4585190,4585278-4585338,
           4585610-4585795
          Length = 930

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 335 LAGSDGEVDWQELKEILDYAMGEELAMRH 421
           ++  D EV W+ELK+I  +  G E A+R+
Sbjct: 178 VSDGDKEVIWKELKKIFQFPEGSEAAVRN 206


>03_06_0193 + 32243458-32243556,32243566-32244273
          Length = 268

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 218 DNNMAXNDEDIGMGDVDDRVKELAPDPEPADPVREFFTRLAGSDGEVDWQELKE 379
           D++ + +D+DI   DV+D++ E  PD E  D   E        D + D + L +
Sbjct: 188 DDDESLDDDDIECYDVEDKICEENPDDEIFDDEEEIDCEEDLDDDDDDCESLDD 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,226,626
Number of Sequences: 37544
Number of extensions: 145454
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)