Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O15
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   1.9  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    27   2.5  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    27   4.3  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   4.3  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    26   7.5  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    25   10.0 

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 420 RARVSNNGSVSXIKRLDISTPISMXLDNWPNDMQTCTFKFGSRMHN 557
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 242 VRVYRADTGRSSNELDRQTTXLERRGMGL-QHLAG 343
           +R ++   GR+  ELDR+ T L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 504 WPNDMQTCTFKFGSRMHNSDQMDFVIDKRIYXMFES 611
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 147 TRSSQRTIGSLPPHSKIVVNLTLHLRHANI 236
           T S+Q  + S+  H+K+ +NLTL+L  +++
Sbjct: 463 TLSAQIAVQSVSSHAKLGMNLTLYLTFSSV 492


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 287 PIHLKICQYPHGRLGLTNVSMSQMQGQVDYD 195
           P  L +C Y H RLG+ N+   Q +GQ D+D
Sbjct: 210 PGRLYVCNYCHRRLGVWNL---QSEGQ-DFD 236


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 20/62 (32%), Positives = 22/62 (35%)
 Frame = -3

Query: 575 EIHLVTIVHPRTELERASLHVVGPIV*XHRNWSANVQALYXGDGAVIRYTGAESVVPGGG 396
           E H    V   T      LH+ G        W A + A    DGAV  Y      V GGG
Sbjct: 108 EPHTADSVILATGASARRLHITGE----DTYWQAGISACAVCDGAVPIYRNKPLAVVGGG 163

Query: 395 CS 390
            S
Sbjct: 164 DS 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,723
Number of Sequences: 5004
Number of extensions: 54356
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)