Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_O13
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 116 2e-26
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 91 1e-24
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 80 2e-15
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 49 5e-06
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 38 0.013
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623... 31 1.1
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 31 1.5
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 31 1.5
05_01_0094 - 627259-628236,628609-628689 25 3.3
10_07_0103 - 12886489-12886584,12887952-12888086 29 3.5
05_01_0339 + 2673862-2675637 29 3.5
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 29 4.6
01_02_0048 - 10626467-10627498,10628522-10628617 29 4.6
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 29 6.1
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 29 6.1
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 28 8.1
11_01_0318 - 2373511-2375073 28 8.1
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 116 bits (279), Expect = 2e-26
Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Frame = +1
Query: 184 GYQCEEHNVVTEDGFVLTVFRVSSGQ-------RCSRTQIPVLLVHGLLQSADSWLDAGP 342
GY CEEH V T+DG++L + R+ G+ + + PVLL HG+L +WL P
Sbjct: 57 GYPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQPVLLQHGVLVDGMTWLLGSP 116
Query: 343 GSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAILDYV 522
L Y+LAD DVW++N RG +S RH++LDP S +YWN+S D+I D+PAI+DYV
Sbjct: 117 EESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKS-RSYWNWSWDDIVVNDMPAIVDYV 175
Query: 523 LNRSRADILNYVGFSQGAGTFFIMCSERPNYCEKIKLMIALAP 651
+ + +YVG S G SE +K+K L+P
Sbjct: 176 CSHT-GQKPHYVGHSMGTLVALAAFSE-GRMVDKLKSAALLSP 216
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 91.1 bits (216), Expect(2) = 1e-24
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Frame = +1
Query: 184 GYQCEEHNVVTEDGFVLTVFRVSSGQRCSRT------QIPVLLVHGLLQSADSWLDAGPG 345
GY CEEH V TEDG++L++ R+ SG+ + ++PVLL HGL+ +WL P
Sbjct: 63 GYACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLMNSPN 122
Query: 346 SGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAY 462
L Y+LAD +DVW++N+RG YSR H +L Y
Sbjct: 123 ESLGYILADNGYDVWIANSRGTVYSRHHTSLVSSDSVIY 161
Score = 40.7 bits (91), Expect(2) = 1e-24
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +1
Query: 457 AYWNFSADEIGYFDLPAILDYVLNRSRADILNYVGFSQGAGTFFIMCSERPNYCEKIKLM 636
AYWN+S DE+ DL A++ YV +++ ++YVG S G S++ ++
Sbjct: 199 AYWNWSWDELSSKDLSAVVQYVYSQAGQQKMHYVGHSLGTLIALAALSDQQQQIGMLRSA 258
Query: 637 IALAPATXQTNTKSXMXR 690
L+P S + R
Sbjct: 259 GLLSPIAFLDKMSSPLAR 276
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +1
Query: 184 GYQCEEHNVVTEDGFVLTVFRVSSGQR--CSRTQIPVLLVHGLLQSADSWLDAGPGSGLA 357
GY C EHNV T+DGF+L++ + G+ T PV L HGL Q D+W L
Sbjct: 55 GYPCTEHNVETKDGFLLSLQHIPHGKNKAADSTGPPVFLQHGLFQGGDTWFINSAEQSLG 114
Query: 358 YLLADACHDVWLSNTRGNYYSRRHLTLDPDS--DAAYWN 468
Y+LAD DVW+ N RG +S+ H T + +WN
Sbjct: 115 YILADNGFDVWIGNVRGTRWSKGHSTFSVHDKVNTLHWN 153
Score = 35.1 bits (77), Expect = 0.070
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 460 YWNFSADEIGYFDLPAILDYVLNRSRADILNYVGFSQG 573
+W++S E+ +DL A+L YV +++ IL YVG SQG
Sbjct: 209 FWDWSWQELAEYDLLAMLGYVYTVTQSKIL-YVGHSQG 245
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 172 ATRHGYQCEEHNVVTEDGFVLTVFRVSSGQRCSRTQI----PVLLVHGLLQSADSW 327
A GY CEE+ V TEDG++L++ R+ G S T PVLL HGL+ + W
Sbjct: 77 AAAFGYPCEEYKVTTEDGYILSLKRIPHGPHDSNTSTEMRPPVLLFHGLMVAYWEW 132
Score = 44.0 bits (99), Expect = 2e-04
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = +1
Query: 457 AYWNFSADEIGYFDLPAILDYVLNRSRADILNYVGFSQGAGTFFIMCSERPNYCEKIKLM 636
AYW +S DE+ +DLPA+L + + + + ++Y+G S G SE + ++
Sbjct: 128 AYWEWSWDELASYDLPAVLQFAYDHT-GEKIHYIGHSLGTLMILAAFSEH-KLLDVVRSA 185
Query: 637 IALAPATXQTNTKSXMXR 690
+ L P + TKS + +
Sbjct: 186 VLLCPIAYLSRTKSKLLK 203
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +1
Query: 361 LLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAILDYV 522
L +A +DV+L N RG SR H+ + S YW +S +E G D+PAI++ +
Sbjct: 121 LWVNAGYDVFLGNLRG-LVSREHVDKNISS-YKYWKYSVNEHGTKDMPAIVEEI 172
>12_02_0095 +
13559997-13560232,13561295-13561683,13562092-13562387,
13562475-13563361,13563440-13563562,13563693-13563981,
13564211-13564249
Length = 752
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = -2
Query: 108 VSAVAEVLSRL*FRARTRVARLACELSPPPCXTTP 4
+S V++++S++ F + T V+RL L+PPP T+P
Sbjct: 7 ISRVSQIVSKI-FLSPTTVSRLLRTLAPPPTPTSP 40
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 115 RPSGSWAIRRTPCLNVTE--LATRHGYQCEE-HNVVTEDGFVLTVFRVSSGQRC 267
R GSW+++ PC + + + + E + + EDG +L F VS+G+ C
Sbjct: 229 RFEGSWSMKALPCFEILQGMIVFTVAFLAESGYCLEVEDGKLLITFTVSTGKLC 282
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 30.7 bits (66), Expect = 1.5
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 217 EDGFVLT--VFRVSSGQRCSRTQIPVLLVHGLLQSADSWLDAGPGSGLAYLLADACHDVW 390
+D +LT VF + S P G++ +A L AGP L Y L A H W
Sbjct: 97 DDQIILTALVFYLVSATMPQAQVAPWWSTKGMVVTAV--LHAGPVEFLYYWLHRALHHHW 154
Query: 391 LSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAI 510
L Y+S H ++ + + + A+E+ YF L AI
Sbjct: 155 L---YARYHSHHHASIVTEPITSVIHPFAEEVVYFVLLAI 191
>05_01_0094 - 627259-628236,628609-628689
Length = 352
Score = 25.0 bits (52), Expect(2) = 3.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 332 TRGPAPASPTCWQTLATTCGSPTLAATITRGATSLSI 442
T G PA T T ++TC +P A +LSI
Sbjct: 175 TAGSTPAGSTTTTTTSSTCATPNAPALPAMLGGNLSI 211
Score = 23.0 bits (47), Expect(2) = 3.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 308 CRALTRGWTRGPA 346
CRA R WTRG A
Sbjct: 129 CRACRRYWTRGGA 141
>10_07_0103 - 12886489-12886584,12887952-12888086
Length = 76
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 271 RTQIPVLLVHGLLQSADSWLDAGPGSGLAYL 363
R +P+LLV +AD DAG G+G+ +L
Sbjct: 9 RLAVPLLLVLAAAAAADGVADAGAGAGMTHL 39
>05_01_0339 + 2673862-2675637
Length = 591
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +1
Query: 301 GLLQSADSWLDAGPGSGLAYL---LADACHDVWLSNTRGNYYSRRHLTLDPDSDAAY 462
GLL A S+++ GP + A L L AC S G Y + + L LDP AAY
Sbjct: 475 GLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEV-GKYAAEKLLLLDPSCTAAY 530
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -2
Query: 414 IVAASVGEPHVVASVCQQVGEAGAGPRVQPRVSALQQTVHEQHWDLCTRA--PLAARHAE 241
I+ +S P +A +VG+ G V +AL Q + W + T A P AAR +
Sbjct: 471 ILESSTLLPGELARRKGKVGDGGGAAAVADAAAALVQAGNVAEWKMATAAALPAAARTEQ 530
Query: 240 NGQH 229
QH
Sbjct: 531 QQQH 534
>01_02_0048 - 10626467-10627498,10628522-10628617
Length = 375
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Frame = +2
Query: 236 PFSACRAANGARVHRSQCCS---CTVC--CRALTRGWTRGPAPASPTCWQTLATTCGSPT 400
P + CR N A HR S VC C A GW P +P ATT G
Sbjct: 116 PVATCRLCNEAVAHRYCLQSDDDTFVCAACVAAAHGWRFSYTPTAPPPAALAATTTGGVV 175
Query: 401 LAATITRGATSLSI 442
A + AT + +
Sbjct: 176 SDAPLDIRATRIML 189
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 341 PAPASPTCWQTLATTCGSPTLAATITRGATSLS 439
PAP S QT A+ G P + A + GATS++
Sbjct: 111 PAPESDAPAQTFASEDGVPNVRARVLGGATSIN 143
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 336 RVQPRVSALQQTVHEQHWDLCTRAPLAARHAENGQHESV 220
+V+P +SALQ+ +H Q ++ T A A + +G ++ +
Sbjct: 245 QVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKI 283
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +1
Query: 388 WLSNTRGNYYSRRHLTL-DPDSDAAYWNFSADEIGYFDLPAILDYVLNRSRADILNYVGF 564
WL +Y+ + D D + D G+ + A L++ +++ +I +GF
Sbjct: 521 WLVAPNSIFYAEHDWKIADAPFDPLQYQQQTD--GFEESYAYLEHAISQM-GNIDGILGF 577
Query: 565 SQGAGTFFIMCSERPNYCEKIKLMIAL 645
SQGA + C ++ C +K +
Sbjct: 578 SQGAAMAALFCRQQQKTCGSLKFRFGI 604
>11_01_0318 - 2373511-2375073
Length = 520
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +2
Query: 239 FSACRAANGARV---HRSQCCSCTVCCRALTRGWTR 337
FS C AA G + R CSC VC LT W R
Sbjct: 27 FSVCLAALGVVLLVARRWPWCSCHVCRAYLTGSWAR 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,088,714
Number of Sequences: 37544
Number of extensions: 417642
Number of successful extensions: 1318
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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