Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O13
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   8.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 25/95 (26%), Positives = 37/95 (38%)
 Frame = +1

Query: 295 VHGLLQSADSWLDAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFS 474
           +HGL  SA +    GPG+  A  L      V    + G   S        +SD +  + S
Sbjct: 143 LHGLSSSAPTGSSCGPGAAAAAALLSKRRSV-SECSLGTASSTSSTASSRNSDRSAGSPS 201

Query: 475 ADEIGYFDLPAILDYVLNRSRADILNYVGFSQGAG 579
             E    D   ++ Y  N+S  D  + V  S  +G
Sbjct: 202 VSESDEVD---VIGYTSNQSDTDDHSSVQSSSDSG 233


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 324 RVSALQQTVHEQHWDLCTRAPLAARHAENGQHESVLRDY 208
           R    +Q VH Q +    R+P  + H+ +    +V+  Y
Sbjct: 66  RAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQY 104


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 290 CSCTVCCRALTRGW 331
           C C +C +A +R W
Sbjct: 43  CKCHLCGKAFSRPW 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,654
Number of Sequences: 438
Number of extensions: 3399
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)