Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O10
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   1.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    28   1.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    28   1.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.4  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   5.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     26   7.8  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
 Frame = +1

Query: 112  SHLIDLHCYIKTNITSQFGPLTCMRL-TGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSG 288
            S  +D+   I+  + S   PLT +   TG+ G    N    I   Y  Y ++T     + 
Sbjct: 1666 SSSMDMRFIIELLLGSDDSPLTLVGTGTGKSGKLVCNLYKTILKHYVHYGLSTSVPLYTS 1725

Query: 289  DD--SLVS----PPPPAHPDWDAVSPLLSLTFKKE 375
             +  +L+S     PPP H ++D  + +++L F+KE
Sbjct: 1726 LEKHNLISRSPSSPPPIHTNFDTNADIITL-FEKE 1759


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/89 (23%), Positives = 33/89 (37%)
 Frame = +1

Query: 76  LERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY 255
           L R+    LS  + +      I+ +    +    C  +   P T DD+ +Y       EY
Sbjct: 382 LARRVSSPLSALNQMSQSPIPIRVSSDKDYDSYACHEVVSNPSTLDDDYNYMFVCPPEEY 441

Query: 256 DITTQTVFVSGDDSLVSPPPPAHPDWDAV 342
             +T  V     D L S P P     ++V
Sbjct: 442 TYSTDNVRTDSLD-LQSLPTPTLEQLESV 469


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 556 LLPADQVIYQSALFDFFCRECSXEQKLALKIGEVPELLCQTMLSLGFLLVITPP 717
           L  +D VIY    F F C +       +LK+ +  E  C+ +L   F L+   P
Sbjct: 76  LTKSDAVIYLEDQFHFHCYDYYYTPIPSLKLKDSEENTCEMILHSSFYLLFHEP 129


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 739 RPPTFISSHSFRPPSFPIL 795
           RPPTF SS S +P S PIL
Sbjct: 264 RPPTFFSSPSPQPYSGPIL 282


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 144 FDVAMEVYKMRWNGKPL-HFLPFQDN 70
           F VAME+ K+R +GK L   L + DN
Sbjct: 358 FAVAMEIIKLRLSGKSLASILAYDDN 383


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 173 KGPN*LVMLVLM*QWRSIR*DGMESRSIFFRSKTTASPC*ELVKRRV 33
           KGP+ L +L++   W +     ME  S F R  +T  P     KR V
Sbjct: 188 KGPSELAILIVNCLWEAFSPQVMEVWSKFTRFSSTVEPSRAETKRTV 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,691
Number of Sequences: 5004
Number of extensions: 70004
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)