Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O10
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   8.3  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 283 SGDDSLVSPPPPAHP 327
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 283 SGDDSLVSPPPPAHP 327
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 472 DDRTLSDKIASYLSEFVVGHSLGDAFWT 555
           D R     IA YL++   G  + D  WT
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLIWT 99


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 250 EYDITTQTVFVSGD-DSLVSPPPP 318
           EY  + Q  FV+ D D  + PPPP
Sbjct: 357 EYSPSVQHEFVTFDLDEPLPPPPP 380


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +3

Query: 102 FHSISSYRPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 266
           + S + + PP  H +QH+ S      H     + H   QHG           HHH
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS----QYHPHRGSSPH--HQHGNHTMGPTMGPPHHH 353


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 747 YVY*LALVSPPLFSDPSVXGVCHWISDDLSWK 842
           ++Y L+L  PPLF   S       +S  +SW+
Sbjct: 23  WIYALSLSLPPLFGWGSYGPEAGNVSCSVSWE 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,084
Number of Sequences: 438
Number of extensions: 5440
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)