Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_O09
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 28 1.4
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 28 1.8
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 27 2.4
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 4.2
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.2
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 5.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 5.5
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 26 7.3
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 7.3
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 25 9.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 9.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.7
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 25 9.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 9.7
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 125 TPKEMGTGGSLHPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNM--ILNFGP 298
T E+ L P++ + EG + + +K PVP +S P E N+ F
Sbjct: 20 TDHEIDLEKGLLPEYNSEEEGTLPLYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKD 79
Query: 299 QHPAAHGVLRLVLEL 343
HP + +LRL++ +
Sbjct: 80 SHPNIYFLLRLLISV 94
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 281 SCCVLSFRPVL*CCYKEQVSMIWST 207
SC +L +PV C Y E+++ W T
Sbjct: 289 SCTILKSKPVSLCVYPEKITFNWLT 313
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 125 TPKEMGTGGSLHPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNM--ILNFGP 298
T E+ L P++ + EG + + +K PVP +S P E N+ F
Sbjct: 20 TDHEIDLEKGLLPEYNSEEEGALPPYSDISKLANPVPEDSSTGPTEIANPNVERRQEFKD 79
Query: 299 QHPAAHGVLRLVLEL 343
HP + +LRL++ +
Sbjct: 80 SHPNIYFLLRLLISV 94
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 578 LLNHIMAVGTHALDVGALTPFFWLFEERXKMMEFYERVSGARMHAAYIRPGGV 736
L NH +A G H D+ +TP F + K + FY G + I PG +
Sbjct: 814 LSNHPIAGGVHLPDLTVVTPVF----DNNKDIIFYCAARGHMVDVGGITPGSM 862
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 584 NHIMAVGTHALDVGALTPFFWLFEERXKMMEFYERVSGARMHAAYIRPGGVRLTC 748
+ I + GT ALD G +P++ + + +E Y + R+ A+ P R +C
Sbjct: 23 HEIQSAGTVALDNGVESPYYICVQVENQGIEVY-HMKDERLFASCPLPEKTRFSC 76
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 440 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNH 589
P++D + V C++ Y K++ + R + ++T + RLL H
Sbjct: 418 PHYDSM-LVKCTCHDATYEYTRRKMIRSLIEFRVRGVKTNIPFVLRLLMH 466
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 400 STTVQETYVRICCTDCLSVQFQYETQHPVSGWML 299
S TV E+Y +I C + + Q H + GW L
Sbjct: 1905 SCTVSESYKQIDCDTYEATRLQKLLLHSIGGWPL 1938
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 213 VDSSGYMTGPSNCFTKS 163
VD+SGY+T PSN +S
Sbjct: 130 VDASGYVTDPSNLIERS 146
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 7.3
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 321 CCVSYWNWTER 353
CC+S W+WT R
Sbjct: 157 CCLSNWSWTHR 167
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 188 PVMYPDESTKSLKPVPYNSIIKPAEK 265
P+ ++ ++LKPV Y+++ KP +K
Sbjct: 437 PLSIFKDTVRALKPVEYHTMCKPVKK 462
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 95 NKTDFWAKLGDFRNKTLRREAIFDNSV 15
+K D+W + F + +RR A D +V
Sbjct: 768 SKADWWTSVAHFNRERIRRGATVDKTV 794
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 152 SLHPDFVKQFEGPVMYPDESTKSLKPV 232
+LHP +KQ E P + EST + P+
Sbjct: 3665 NLHPSVIKQCEFPWSFSSESTDTGYPL 3691
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/72 (18%), Positives = 33/72 (45%)
Frame = +2
Query: 401 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 580
+ +++ + ++ LP DY+S++ +E + + +KY F I+R
Sbjct: 326 QSILQEENWSNTLPQITGYDYMSLVSYVHLLLKCLENPFDHHYAIYSKYATPYFHGISRQ 385
Query: 581 LNHIMAVGTHAL 616
++ +A T+ +
Sbjct: 386 VHDWIATNTNLM 397
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 533 EEHRCSAASRRPDCSTARCTSWTRSPDGRSTAGLG 429
+E C + + PD ++ RC +G T LG
Sbjct: 380 DERSCFTSKQNPDTTSDRCRQQESKDNGNRTVFLG 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,328,319
Number of Sequences: 5004
Number of extensions: 67609
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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