Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_O09
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0217 - 1712979-1713794                                           31   1.4  
09_02_0295 - 7039870-7040634                                           29   3.3  
06_03_1000 - 26778993-26779478                                         29   4.4  
07_01_0177 + 1247937-1249067                                           29   5.8  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    29   5.8  
11_03_0128 - 10437407-10438049,10438097-10438272                       28   7.7  

>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -2

Query: 548 CTWPAEEHR-CSAASRRPDCSTARCTSWTRSPDGRSTAGLGC 426
           C+ PA+  R C    R   C T     W   PDG ST    C
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNAC 213


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 455 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLL 583
           L Y+S +C   CY  A       DV +RA+Y R  F    R L
Sbjct: 167 LVYISGLCVVYCYMKASNLFSRFDVHVRARYNRLGFVAFCRSL 209


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -2

Query: 515 AASRRPDCSTARCTSWTRSPDGRSTAGLGCMSCIQSAFQYHGAGDLC-EDLLHGLSLRPV 339
           AA+ RPD +     S + +       G G  S   +A     + D C      G +LRP 
Sbjct: 30  AATARPDDAGVPEESGSATVRQGGGGGGGGASVSAAAAAVVESSDGCVTPTSAGSALRPA 89

Query: 338 PVRDAAPRERLDAGARSSGSCC 273
            V   APR+   AG R +  CC
Sbjct: 90  TVCPPAPRKPRPAGKRMTKRCC 111


>07_01_0177 + 1247937-1249067
          Length = 376

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 802 AFGEXRTRTHRCRPSDPAACQANPSWSDV 716
           +FG      +   PSDP++  ++PSW DV
Sbjct: 145 SFGSQLVLAYYSAPSDPSSGSSSPSWVDV 173


>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
            6653569-6653766,6654485-6654568,6655175-6655920,
            6656480-6657341
          Length = 1194

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +2

Query: 260  EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 439
            E+ V NM  +    H  AHG +RL +E++   +R     + ++ R     + YK      
Sbjct: 1005 EQHVSNMCKSCS-NHARAHGQVRLAMEMEKMNIRLGKEMVTMICRQIIVPVYYKNLMARS 1063

Query: 440  PYFDRL-DYVSMMCN-EQCYSLAVEKL 514
                 L D  S   N    Y+L +EK+
Sbjct: 1064 AMLTCLTDSESQRANGNALYALTIEKM 1090


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 527 HRCSAASRRPDCSTARCTSWTRSPDGRSTAGLGCMSCIQS 408
           +RC +AS    C ++RC S T S +   + G GC S + S
Sbjct: 218 NRCGSASSW--CPSSRCPSPTASSESLGSWGSGCRSHLSS 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,380,036
Number of Sequences: 37544
Number of extensions: 509542
Number of successful extensions: 1421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1421
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)