Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_O07
(881 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 7e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.002
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.014
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 31 0.014
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 30 0.025
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.032
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 30 0.032
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 30 0.032
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 30 0.032
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 29 0.057
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 29 0.057
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 29 0.057
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.075
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 29 0.075
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.17
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 27 0.17
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 27 0.17
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 27 0.17
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 23 3.7
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 6.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 6.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 6.5
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 8.6
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 8.6
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.5 bits (78), Expect = 7e-04
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 79 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 243
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 244 MNWIDKRLXWNA 279
+ W L W +
Sbjct: 88 LMWEQSHLTWKS 99
Score = 26.2 bits (55), Expect = 0.40
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +3
Query: 453 LCSLDN--WPNDMXTCTFKFGSRMHXSDE 533
+C D+ WP D+ CT S H S+E
Sbjct: 158 VCEYDHTWWPYDILNCTIHIASWSHGSNE 186
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 85 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 252
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 253 IDKRLXWNAGR 285
+D+RL + G+
Sbjct: 62 VDRRLAFQGGK 72
Score = 23.0 bits (47), Expect = 3.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 459 SLDNWPNDMXTCTFKFGS 512
+L+N+P D C +FGS
Sbjct: 133 NLENFPMDTQRCPLQFGS 150
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.5 bits (68), Expect = 0.011
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 421
V S+ +WRPD+VL NA A +A + + G V W
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
Score = 22.2 bits (45), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Frame = +3
Query: 456 CSLD--NWPNDMXTCTFKFGS 512
C +D +P D TC KFGS
Sbjct: 153 CEIDVEYFPFDEQTCVLKFGS 173
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 31.1 bits (67), Expect = 0.014
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGSVSW 421
V S+ +WRPD+VL NA A +A ++ G V W
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
Score = 22.6 bits (46), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 456 CSLD--NWPNDMXTCTFKFGSRMHXSDEXD 539
C +D +P D TC KFGS + + D
Sbjct: 149 CEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
+ RLW+PDV++ N+A G Y V NNG+ ++
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYV 139
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 30.3 bits (65), Expect = 0.025
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 456 CSLD--NWPNDMXTCTFKFGSRMHXSDEXDFVID 551
C+ D +WP D C FGS +H +E + +D
Sbjct: 169 CATDFSSWPYDTHRCRINFGSWVHSGEEVNIFLD 202
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 29.9 bits (64), Expect = 0.032
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKRLDISTPIXMQLR 466
ER+WRPD N + + R+S +G + + RL I M+LR
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELR 167
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.9 bits (64), Expect = 0.032
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 29.9 bits (64), Expect = 0.032
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYV 170
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 29.9 bits (64), Expect = 0.032
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 421
G V SE +W PD+VL N A G+Y + +A + G VSW
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSW 148
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V++NGS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 29.1 bits (62), Expect = 0.057
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = +2
Query: 317 ERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSVSWI 424
+++W+PD+VL N A G+Y +R + + NG V W+
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
Score = 25.0 bits (52), Expect = 0.92
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +3
Query: 447 QXLCSLD--NWPNDMXTCTFKFGSRMHXSDEXDFVI 548
Q C++D +P D TC KFGS D+ +
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL 183
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 29.1 bits (62), Expect = 0.057
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 290 GCSTWLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 421
G T V SE +W PD+VL N A G+Y + +A + + G V W
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 29.1 bits (62), Expect = 0.057
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 284 EWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSVSW 421
E+G T L V SE +W PD+VL N A G + +A + G V W
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
Score = 22.6 bits (46), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +3
Query: 456 CSLD--NWPNDMXTCTFKFGSRMHXSDEXD 539
C +D +P D TC KFGS + + D
Sbjct: 145 CEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.7 bits (61), Expect = 0.075
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 421
V S+ +WRPD+VL N A G+Y + +A V +G V W
Sbjct: 105 VPSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.075
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAAATTAGDYALRAR--VSNNGSVSWI 424
V R+WRPD +L N A + VS+ G V W+
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 106 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 264
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 265 LXWN 276
L +N
Sbjct: 95 LRFN 98
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 308 VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWI 424
++ +LW+PD+++ N+A G Y V+++GS ++
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYV 102
Score = 25.8 bits (54), Expect = 0.53
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 196 NIRESESTVRIQADLQMNWIDKRLXWNAGRVG 291
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.5 bits (58), Expect = 0.17
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = +2
Query: 290 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 442
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 443 TPIXMQLRQLAQRHAXLHVQV 505
M L+ H+++
Sbjct: 136 ASCPMNLQYFPMDRQLCHIEI 156
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.5 bits (58), Expect = 0.17
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = +2
Query: 290 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 442
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 79 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 135
Query: 443 TPIXMQLRQLAQRHAXLHVQV 505
M L+ H+++
Sbjct: 136 ASCPMNLQYFPMDRQLCHIEI 156
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 27.5 bits (58), Expect = 0.17
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = +2
Query: 290 GCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKRLDIS 442
G T V SE +W PD +N ATT+ ++ R+ ++GS++ RL I+
Sbjct: 18 GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHHSGSITRSIRLTIT 74
Query: 443 TPIXMQLRQLAQRHAXLHVQV 505
M L+ H+++
Sbjct: 75 ASCPMNLQYFPMDRQLCHIEI 95
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 23.0 bits (47), Expect = 3.7
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 438 LALQXLCSLDN--WPNDMXTCTFKFGSRMHXSDEXDFVIDXXI 560
L L+ C+++ +P+D C + S H +DE F D +
Sbjct: 157 LTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDV 199
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = -3
Query: 510 NRT*TCKXACRWANCLSCIXIGVLMSK 430
N+T TC W SC+ + ++ ++
Sbjct: 241 NQTITCPIKVSWRGNYSCLKVDLIFTR 267
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = -3
Query: 510 NRT*TCKXACRWANCLSCIXIGVLMSK 430
N+T TC W SC+ + ++ ++
Sbjct: 292 NQTITCPIKVSWRGNYSCLKVDLIFTR 318
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 218 RIYRNGTVNYLMRRHLI 234
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.2 bits (45), Expect = 6.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = -3
Query: 510 NRT*TCKXACRWANCLSCIXIGVLMSK 430
N+T TC W SC+ + ++ ++
Sbjct: 241 NQTITCPIKVSWRGNYSCLKVDLIFTR 267
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -1
Query: 56 QVRRNGNKNNISRRHFI 6
++ RNG N + RRH I
Sbjct: 167 RIYRNGTVNYLMRRHLI 183
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.8 bits (44), Expect = 8.6
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 520 CILEPNLNVQVCMSLGQLSKLHXNWSANVQALY 422
C L PN + VC+ + + + H A+ +Y
Sbjct: 93 CELSPNSTIAVCVCMRKCPRRHRPVCASNGKIY 125
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,303
Number of Sequences: 438
Number of extensions: 4141
Number of successful extensions: 55
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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