Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_O03
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 199 3e-51
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 47 2e-05
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 46 5e-05
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 44 1e-04
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 35 0.068
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 2.6
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.5
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.5
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 199 bits (485), Expect = 3e-51
Identities = 111/230 (48%), Positives = 139/230 (60%), Gaps = 8/230 (3%)
Frame = +1
Query: 73 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 243
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 244 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 408
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 409 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILEXDXKHSDILW 588
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILE D H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 589 NTAVVISDTGNVIGKHRKNHIPRVGDLTNPTTTWKVTPAILLFXTRYRKI 738
NTAVVI + GN+IG HRKNHIPRVGD T + +F T Y KI
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKI 255
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +2
Query: 743 VNICFGRHXVLNWMMFGXNGAXILLIP 823
VNIC+GRH LNW+ FG NGA I+ P
Sbjct: 257 VNICYGRHHPLNWLAFGLNGAEIVFNP 283
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/100 (28%), Positives = 55/100 (55%)
Frame = +1
Query: 355 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 534
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 535 VIVSSILEXDXKHSDILWNTAVVISDTGNVIGKHRKNHIP 654
VI S E + ++ +N+ +I G +G +RK+HIP
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIP 127
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 45.6 bits (103), Expect = 5e-05
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Frame = +1
Query: 319 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDG--- 489
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 490 -PTTTFLRELAIKYAMVIVSSILEXDXKHSDILWNTAVVISDTGNVIGKHRKNHI 651
P+ + + E+A + +V + + + L+NT V G + GKHRK H+
Sbjct: 110 APSFSMMSEVARSLQITLVGGSISE--RSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 44.4 bits (100), Expect = 1e-04
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Frame = +1
Query: 397 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILEXDXK 570
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + +
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPE--R 68
Query: 571 HSDILWNTAVVISDTGNVIGKHRKNHIPRV---GDLT 672
S L+NT VI G + KHRK H+ + GD+T
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDIT 105
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 35.1 bits (77), Expect = 0.068
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Frame = +1
Query: 337 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 483
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 484 D--GPTTTFLRELAIKYAMVIVSSILEXDXKHSDILWNTAVVISDTGNVIGKHRK 642
D GP T L LA KY + +V ++E + L+NT + G +GKHRK
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVE---RVGYTLYNTVLFFDPLGKYLGKHRK 158
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +1
Query: 412 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILEXDXKHSDILWN 591
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 592 TAVVISDTGNVIGK 633
+ TGNV +
Sbjct: 824 ETASFTATGNVFSQ 837
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 488 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 378
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 461 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 330
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,820,339
Number of Sequences: 37544
Number of extensions: 451950
Number of successful extensions: 1229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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