Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N24
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   4.3  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.7  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   7.6  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   7.6  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   7.6  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   7.6  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 472 VVPKMAHXHQPSEKYCGDNSXGKRHTDFLPD 564
           V+P +A  H P  ++   N+ G+  TDF PD
Sbjct: 417 VLPLLADPH-PRVRWAACNAVGQMSTDFAPD 446


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 255 IESREPSPPRDLSQLESHKAQSSHPSYLAYSSTIFPGRRRPS*LYSPTTRLFT 413
           + +  P+PP   +        SS PS    +S  FP     S L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 672 GMSSMHXRVTPRYLTFLAQGMGCXKRVIGGVRFLLLIREE 553
           G SS+  R T R   F   G+G  + +I GVR L+  R++
Sbjct: 499 GFSSLSTRFTDR---FKEAGIGGLENIISGVRNLIPFRKD 535


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 380 LALFADDTTVYYSSXNKSLIAKXLQSAXLGQWF 478
           LALFAD+ +  +S      + K L     GQWF
Sbjct: 100 LALFADEPSAPFSIHQFVTMGKTLCDINPGQWF 132


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 356  IPRSPPTQLALFADDTTVYY-SSXNKSLIAKXLQSAXLGQWFRKWRI-XINPAKSTAV 523
            IP   P   + FADDTT    SS   S I++         W  +W+   +   KSTA+
Sbjct: 1036 IPDDVPPPYSEFADDTTAQAGSSKRDSAISEDPDHHKSVWWSLRWQSRLVGRGKSTAL 1093


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 528 FXGEAPHGFPPGLGGGISHPRLLSLXNPYPAPGRSSTWALPXNASM 665
           F G+AP+   PG G   S+ +  +     PAPG ++  A P   SM
Sbjct: 191 FAGQAPYNVRPGYGMP-SNQKPPNFAPGMPAPGPTAVSASPSLQSM 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,872
Number of Sequences: 5004
Number of extensions: 64778
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)