Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N24
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    57   1e-08
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.007
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    36   0.036
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z78416-2|CAB01677.2|  583|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
 Frame = +2

Query: 221 IRDFLSNRSIRYRVEGTLSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTQLAL--FA 394
           + +FLSNRS R R+  TLSS +  T GVPQG            NDI    P ++A   FA
Sbjct: 50  VNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFA 109

Query: 395 DDTTVYYSSXNKSLIAKXLQSA--XLGQWFRKWRIXINPAKSTAV 523
           DDT + Y+S  K+     LQSA   +  W +  ++ +N +K+  V
Sbjct: 110 DDTKL-YASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTVHV 153


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 2/155 (1%)
 Frame = +2

Query: 194 GVPDSLGLIIRDFLSNRSIRYRVEGTLSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPP 373
           G+   + L + ++L  R IR   +   S    L  GVPQG             D+P    
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQD 556

Query: 374 TQLALFADDTTVYYSSXNKSLIAKXLQ--SAXLGQWFRKWRIXINPAKSTAVXXXXXXXX 547
           T L  +ADD ++          A+ +Q     + ++ ++  + I+  KST          
Sbjct: 557 TMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVT-------- 608

Query: 548 XXXXXXXXXNLTPPITLFXQPIPCARKVKYLGVTL 652
                       P I     PIP     K LG+TL
Sbjct: 609 VFSCDPKEHKTKPDIYWMDDPIPVINAPKLLGITL 643


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -1

Query: 357 ISLTNKLNRRGERTEPCGTPAVRGRGEER 271
           ISLTN     GERT+PCGTP     G E+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 206 YPARPCKYPWPANGA--ARMVASSTASSFAPPIP 111
           YP  P  Y WPA+ A  A  + + T +  APP+P
Sbjct: 370 YPQTPLCYIWPASYAPNASRIVTGTMAPAAPPVP 403


>Z78416-2|CAB01677.2|  583|Caenorhabditis elegans Hypothetical
           protein C23H4.2 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = +1

Query: 79  RICKFSYGLATGIGGANDEAVDEATIRAAPFAGH--GYLHGRAG*SRAHHTGLLVEPLYS 252
           +I   SYG   G+   +D+A  + T ++ PFA    G L         H  G+L   +YS
Sbjct: 19  KIINTSYGKLRGMAEWSDDANHKFTFKSVPFAKPPIGNLRFAPPQKLDHWDGILDASVYS 78

Query: 253 ISSRGNPLLPATSH 294
            +   N  L   S+
Sbjct: 79  AACMSNSTLTTQSY 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,575,020
Number of Sequences: 27780
Number of extensions: 387940
Number of successful extensions: 1038
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)