Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_N18
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    36   0.010
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    35   0.013
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    35   0.013
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   7.8  

>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 709 MRYVAAYLLAVLGGXTTPXAADVEKI 786
           M+Y+AAYLL  +GG  +P A+D+E +
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESV 26


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 709 MRYVAAYLLAVLGGXTTPXAADVEKI 786
           M+Y+AAYLL  +GG  +P A+D+E +
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESV 26


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 709 MRYVAAYLLAVLGGXTTPXAADVEKI 786
           M+Y+AAYLL  +GG  +P A+D+E +
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESV 26


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 704 KKCVTWPRIYWLCWV 748
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,024
Number of Sequences: 5004
Number of extensions: 59365
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)